Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso18g1771 ATGGCTGTGAATTTTGGGAATATCTTGTTTACGTCGTCTCAGTCTAGCTCACAGGTTCATGGGGTCACTGATTCTGTCCAGGTTGCAGTGTGTTCTCTTTGTCAAAAGGCCCTATCACCTGATAATGAGATGGCAAGCGATCTTGCTAGCAGTGGTGTGTGTGGTGATTGTAAATTTTTGTTACTTGAAGACTTTGGGAATCATACACTTACCCAAAGCTCACGATGGAGGCTTAGAGGAAGATTCAGGCACAACAGTTCTGAATCCGTTGAGAATAATTTCTCACAGCAGATCCCCCATGTGGTTAATACTGTGAGGCAACATCAGTCAGCTGCTTCTGGGGAGGATGATCAACTTGTAGATGGTGATACCCCTGCTTGGTCATTGCAATATGCTAGTGCACATACTACCCCTAGTGGGTCTAGAAGGTGGAGGCAGGTTCTCTCTGACACTGACAGTGATGGTTTTGATAATTGGAATTCTCTTTATGGCGAAAATGAATCAAGTGCAAGTTTTAGACAGTACAGGCTTCCCCATGGCGAGACTGATTCTTTCTCCCACAGTGCTTATGGAGGTGACTCAGATATCTCTATGGATACTCATAGTTTTGTAGGCACTAGAGTCTTAAATTTTCCAGATGAGGGAGATGAGTTTGACAGTGACACTGACATAGATCCAATGCATGCTGGTCTCAGCCAATGGATTTCTACTGATGAAGACGATGAAGAGGAGGAAGAGGAAGAAGAAGAAGAGGAGGAGGAGGAGGAGGATAGGGAATGGGAATTAGCTGAGGCTGAGGAAGCTGAAGCCACATCCCACCTTCAAATTTTTTTCACCTCTAGTCCAAGTGAGAGCAGGGATCACATTAATTCTACTGAATCTGGGGGAATGTTTAGCCAGATAATCCGGGAGACCTGGCATGCTTTTGAGGATGTTGATTTACCTCATGGAGCAAACTTTGGGGATTATCTTGATGCTAGAGGTTTTGAAGATCTGCTTGAGCATCTTGCTGAGAATGACAGCTCAAGACGAGGAGCACCTCCTGCTGCTGTGTCTTTTGTGAATAATCTGCCACGTGTAGTCATTGGCAAGGAAAATGAGAAGCACGGGGAACTAGTTTGTGCCATTTGCAAGGATGTCTTGACACCCGGCACTGAAGTCAATCAACTTCCATGCTCTCACCTTTATCACAACAATTGTATTTTTCCGTGGTTGAGTGCACGAAATTCATGCCCTCTTTGTCGGTATGAACTTCCAACTGATGATAAGGATTATGAAGAGGGAAAGCAGAACATTGATAGTAGAAATGTGATCCATGAGAGGCAGAGAATAGATGTAACAGATGATAGTTCTTCTGATGTTTCTGATGGAGATGAGGTGAATGAAGAAACTGGTAGTAGTCAAGGTGGAATACAGCAGGGACTTCTGAGCTCAGGTTCTACCATGAATTCTTCTGCAACAAGAAGTGGTAGAGGAAGATGGTTTTTTCTTGCTGCAGCTCCAATTGTTAGTCTAGTGGGCATTGTTCTTGTCTTGTGGTTAGGTAATAACAACTCTCAGATTGAAGGAAGTAGACATCTGGGCGTTCACTACTTATCCGGGCAAAATCAGCACACCATTCATGCTTATTCCTCTCCAAACCAGAGGGAGGGTAGAAGCAGAAGGTGGTGGTGCCCATTCTAA 1683 0.4433 MAVNFGNILFTSSQSSSQVHGVTDSVQVAVCSLCQKALSPDNEMASDLASSGVCGDCKFLLLEDFGNHTLTQSSRWRLRGRFRHNSSESVENNFSQQIPHVVNTVRQHQSAASGEDDQLVDGDTPAWSLQYASAHTTPSGSRRWRQVLSDTDSDGFDNWNSLYGENESSASFRQYRLPHGETDSFSHSAYGGDSDISMDTHSFVGTRVLNFPDEGDEFDSDTDIDPMHAGLSQWISTDEDDEEEEEEEEEEEEEEEDREWELAEAEEAEATSHLQIFFTSSPSESRDHINSTESGGMFSQIIRETWHAFEDVDLPHGANFGDYLDARGFEDLLEHLAENDSSRRGAPPAAVSFVNNLPRVVIGKENEKHGELVCAICKDVLTPGTEVNQLPCSHLYHNNCIFPWLSARNSCPLCRYELPTDDKDYEEGKQNIDSRNVIHERQRIDVTDDSSSDVSDGDEVNEETGSSQGGIQQGLLSSGSTMNSSATRSGRGRWFFLAAAPIVSLVGIVLVLWLGNNNSQIEGSRHLGVHYLSGQNQHTIHAYSSPNQREGRSRRWWCPF* 561
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso18g1771 560 ProSiteProfiles Zinc finger RING-type profile. 374 415 IPR001841 -
Gso18g1771 560 SUPERFAMILY RING/U-box 364 421 - -
Gso18g1771 560 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 249 491 - -
Gso18g1771 560 Coils Coil 235 268 - -
Gso18g1771 560 MobiDBLite consensus disorder prediction 461 484 - -
Gso18g1771 560 PANTHER OS06G0101300 PROTEIN 249 491 - -
Gso18g1771 560 Pfam Ring finger domain 374 415 IPR001841 -
Gso18g1771 560 MobiDBLite consensus disorder prediction 235 266 - -
Gso18g1771 560 MobiDBLite consensus disorder prediction 424 450 - -
Gso18g1771 560 MobiDBLite consensus disorder prediction 424 484 - -
Gso18g1771 560 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 334 421 IPR013083 -
Gso18g1771 560 MobiDBLite consensus disorder prediction 236 264 - -
Gso18g1771 560 SMART ring_2 374 414 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso18g1771 Gso-Chr18 50131816 50134984 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso18g1771 13 560 C3H Transcription Factor Family AT5G01980 41.885 9.74e-120 361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso18g1771 - - gmx:100800933 1055.05
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g1771 18 50131816 50134984 Gso9g2238 9 46672770 46675864 GST