Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso18g1769 ATGGAAGGCAACAACAACAACAACAACAACAACGCTGACGTGTTCAGACCTTCTGTGGGGCCCTCCTCCTCGCCGAACTCGAGGAGATACTCGGGGATTTTATCGGCGTCGAACCTCATTCAGGCACCGCTATCGGCGCTGCTGGAATATTCCGGCATCCTTCCGTCACGGTCGTCCAACCAACACAGCCAGCCCAGCTCCGACGCCGTCAACAATGACGGCGAGGTTTCGATTAGGATCATCGGCCCGGCGGAACAGGAGCAGAGGGAGGAACAACAGCTGCAGCAGACCCCTCCTCCCGGATTGGTCGTCGGACTCTCGCATTCCCATAACGACACCGTTTTGGCATCGGGGTCGCCGCGCGGCGACGCCGAGGGCGCGGCGGGGACCGAGGGCGCCGCCGCTGGAGGGGACGGTGCAGGGAGGGATTCATCTTACCAGAGATATGACATTCAGCATGCCGCCAGGTGGATTGAGCAGGTTTTGCCGTTTTCGTTGCTTCTGTTGGTGGTTTTCATTAGGCAGCATTTGCAAGGGTTTTTTGTGACCATTTGGATTGCTGCTGTGCTTTTCAAGTCCAATGATATTCTAAGGAAACAAACTGCGTTGAAGGGGGAGAGGAAGATGCTGGTTTTGGTTGGGATTTCTGTTGGGTTCGCGCTTCATGTGGTTGGTGTCTACTGGTGGTATCAGAATGATGATCTAATGTATCCATTGATCATGCTTCCTCCCAAGGATATACCGCCTTTCTGGCACGCGATTTTCATCATCATGGTCAATGATACTTTGGTTCGCCAGGCTGCAATGGTATTCAAGTGTATATTGTTGATGTATTACAAGAATAGCAGAGGCCGAAATTATCGTAAGCAGGGTCAAATGCTGACTTTAGTTGAATACCTCCTCCTGCTTTACCGTGCCTTGTTGCCAACACCAGTTTGGTATCGTTTCTTCCTGAACAAAGAATATGGAAGCCTCTTTTCATCACTGATGACAGGATTGTATCTAACATTTAAACTCACGTCTGTTGTTGAAAAGGTGCAATCCTTCTTTGCTGCAGTGAAAGCATTGTCGCGTAAAGAAATGCACTATGGGGCTTATGCAACATCAGAGCAGGTCAATGCAGCTGGTGATCTTTGTGCTATTTGCCAGGAGAAGATGCATGCTCCCATCTTACTACGTTGTAAACATATTTTCTGTGAAGATTGCGTATCAGAGTGGTTTGAGAGAGAAAGGACCTGCCCATTGTGCAGGGCTTTGGTAAAACCCGCAGACCTTAGGTCATTTGGGGATGGCTCTACTAGCTTGTTTTTCCAGTTATTCTGA 1323 0.4974 MEGNNNNNNNNADVFRPSVGPSSSPNSRRYSGILSASNLIQAPLSALLEYSGILPSRSSNQHSQPSSDAVNNDGEVSIRIIGPAEQEQREEQQLQQTPPPGLVVGLSHSHNDTVLASGSPRGDAEGAAGTEGAAAGGDGAGRDSSYQRYDIQHAARWIEQVLPFSLLLLVVFIRQHLQGFFVTIWIAAVLFKSNDILRKQTALKGERKMLVLVGISVGFALHVVGVYWWYQNDDLMYPLIMLPPKDIPPFWHAIFIIMVNDTLVRQAAMVFKCILLMYYKNSRGRNYRKQGQMLTLVEYLLLLYRALLPTPVWYRFFLNKEYGSLFSSLMTGLYLTFKLTSVVEKVQSFFAAVKALSRKEMHYGAYATSEQVNAAGDLCAICQEKMHAPILLRCKHIFCEDCVSEWFERERTCPLCRALVKPADLRSFGDGSTSLFFQLF* 441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso18g1769 440 ProSitePatterns Zinc finger RING-type signature. 394 403 IPR017907 -
Gso18g1769 440 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 7 440 - -
Gso18g1769 440 MobiDBLite consensus disorder prediction 1 30 - -
Gso18g1769 440 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 353 427 IPR013083 -
Gso18g1769 440 Pfam Zinc finger, C3HC4 type (RING finger) 377 420 - -
Gso18g1769 440 CDD RING-HC_RNFT1_like 378 417 - -
Gso18g1769 440 MobiDBLite consensus disorder prediction 113 140 - -
Gso18g1769 440 SUPERFAMILY RING/U-box 371 422 - -
Gso18g1769 440 ProSiteProfiles Zinc finger RING-type profile. 379 417 IPR001841 -
Gso18g1769 440 SMART ring_2 379 416 IPR001841 -
Gso18g1769 440 PANTHER UNCHARACTERIZED RING FINGER-CONTAINING PROTEIN 7 440 IPR044235 GO:0061630|GO:1904294
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso18g1769 Gso-Chr18 50114900 50118864 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso18g1769 17 440 C3H Transcription Factor Family AT5G01960 72.430 0.0 640
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso18g1769 - K22379 gmx:100818546 795.423