Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso18g1762 ATGCCGGCTCTGAGAATTCATGGATATGCCTTGGCTGTTTCGTTTTGTCTTATCACCTTCATAGCAGCCTCACTACCAACAGACCCTTCAGAAGTTGATGCCCTGATAGAGATCAAGAATAGTTTGATTGATCCTAAGAACAATCTTAAGAACTGGAATAAAGGAGATCCATGTGCAGCAAACTGGACTGGTGTTTGGTGTTTTGATCAGAAGGGGGATGATGGGTACTTCCATGTTCGTGAGATCTACTTAATGACAATGAATCTCTCGGGAAGTCTATCACCACAGCTTGGACAGCTATCCCATCTTGAGATACTGAATTTCATGTGGAACGACTTGACAGGCACAATACCAAAGGAGATTGGAAATATTAAATCATTGAAACTCTTGCTCCTGAATGGGAATAAGTTATCTGGTAGTTTACCGGATGAGCTTGGCAACCTTCCAAATTTGAATAGATTCCAAGTAGACGAAAACCAATTGTCAGGTCCTATACCAGAGTCATTTGCCAACATGACCAATATTAGACACCTTCACTTGAACAACAACTCATTTAGTGGTGAACTTCCATCCACACTGTCAAAGCTATCAAATCTTATACACTTGCTTGTGGACAACAATAATTTATCAGGCCATCTTCCACCAGAATACTCCATGTTAGATGAATTGGCAATACTCCAGCTTGATAACAACGATTTCAGTGGGAGTGAAATTCCTTCTACCTATGCAAACCTAACCAGGCTAGTGAAATTAAGTCTACGAAACTGTAGTCTGCAAGGAGCTATTCCTGATTTCAGTTCAATATCCAAGCTTACCTATTTAGATCTTAGCTGGAATCAGATCACTGGACCCATACCATCAAATAAAGTGGCAGACAATATGACAACTTTTGATCTGTCTAATAATCGTCTCAATGGATCCATTCCTCACTTCTTTTATCCTCATCTTCAAAAATTGTCACTTGCAAACAATTTACTGTCTGGGTCTATCCCTGCTAGCATATGGCAGAACATGTCCTTCAGTGCGAAAGATAAACTTACAATTGATCTCCAGAACAACTCATTTTCAGATGTTTTGGGAAACCTGACCCCCCCGGAAAATGTTACCTTGAGGCTTTCTGGTAATCCTATCTGCAAGAATTCTAACATACAAAGTATTGGTCAATATTGTGGACCTGAAGCAGATAATAAGGCAGCCCAAGATTCAACACTCTCAACTTTCTGTCCAGTTCAATCTTGTCCAGTGGATGACTTTTATGAATATGCCCCCTCTTCTCCAGTTCCCTGCTTTTGTGCAGCACCTCTGAGAATTGGATACAGGCTGAAAAGTCCAAGTTTTTCTTACTTTGCTCCCTATAGAAGTAGTTTTGAAGACTATATAACTAGGTCCTTAGACTTAGATCTCTATCAACTATCAATAGATTCAGTTGCTTGGGAAGAGGGACCTCGTCTTAGAATGTATTTGAAACTCTTCCCTTCCTATAATGATTCCGGTTCTAGTATGTTCAATGAAAGTGAGGTCCATCGCATTAAAGGCATATATTCATCATGGCACTTTCCTCGCACTGATTTTTTTGGACCATATGAACTGCTGAACTTCACTCTTCTTGGACCTTATGCAAATTTAAATGTTGATTCAAAGAAGAAAAAGAATAATGTGGGCATAAAAATTTCTGCTGTGATAGCAGCTGTTGCTTGTGCTTTAGCAATATCTGCAATAATCATTCTCCTGATTTCTAAAAGAAATATGAAATACCAGAAGAAGATTTCCAGGAAACGAATGTCTACTAATGTATCTATCAAAATAGATGGCATGAAAGCATTTACTTACAAAGAACTGGCTATTGCTACCAACAAATTTAATATCTCAACTAAAGTTGGCCAAGGAGGTTATGGGAATGTCTATAAAGGCATTTTATCTGATGAAACTTTTGTGGCTGTTAAGAGAGCAGAAGAAGGTTCCTTACAAGGACAAAAGGAGTTTCTGACTGAAATTGAGCTTTTGTCAAGGTTACACCATCGAAATCTTGTCTCGCTGATTGGATACTGTAATGAAAAAGAGGAACAGATGCTGGTTTATGAATTCATGCCCAATGGAACCCTTAGGGACTGGATATCTGGTAAAAGTAGAAAAACCAAGGGAAGCCTAAATTTTAGTATGAGGTTGAGAATTGCAATGGGAGCAGCCAAAGGCATACTGTATCTGCATACAGAGGCTAACCCTCCTATATTCCACAGAGATATTAAAGCCAGTAACATTCTTCTGGACTCCAAGTTTACAGCTAAAGTGGCCGATTTTGGATTGTCACGGCTTGTACCAGACTTATATGAAGAAGGAACTGGTCCTAAATATGTGTCAACAGTTGTGAAAGGAACTCCAGGTTATCTAGACCCAGAATATTTGTTGACTCATAAGCTGACTGACAAATGTGATGTCTATAGCCTGGGAATTGTGTATCTGGAGCTTTTGACAGGCATGCAACCAATATCACATGGGAAAAACATTGTCCGCGAGGTTAATACGGCTCGTCAATCTGGTACAATATATTCCATAATAGACAGCAGAATGGGGTTATATCCATCTGATTGTTTGGACAAGTTTTTAACTCTGGCCCTCAGATGTTGCCAAGACAATCCAGAGGAGAGACCATCAATGCTAGATGTGGTGAGAGAACTGGAAGATATCATTACAATGTTGCCTGAACCTGAAACTCTTTTCTCAGATGTTAGCTTACTCAATTCTGGTAACATAGCACCCCCATCATCTGCAACAACATCAACATCAAATGTGACAAGGGAGGAGCAACACATGTCCTCATATGTTTCAGGAAGTGATCTTGTCAGTGATGTCATTCCCACCGTTGTTCCTCGCTGA 2874 0.3974 MPALRIHGYALAVSFCLITFIAASLPTDPSEVDALIEIKNSLIDPKNNLKNWNKGDPCAANWTGVWCFDQKGDDGYFHVREIYLMTMNLSGSLSPQLGQLSHLEILNFMWNDLTGTIPKEIGNIKSLKLLLLNGNKLSGSLPDELGNLPNLNRFQVDENQLSGPIPESFANMTNIRHLHLNNNSFSGELPSTLSKLSNLIHLLVDNNNLSGHLPPEYSMLDELAILQLDNNDFSGSEIPSTYANLTRLVKLSLRNCSLQGAIPDFSSISKLTYLDLSWNQITGPIPSNKVADNMTTFDLSNNRLNGSIPHFFYPHLQKLSLANNLLSGSIPASIWQNMSFSAKDKLTIDLQNNSFSDVLGNLTPPENVTLRLSGNPICKNSNIQSIGQYCGPEADNKAAQDSTLSTFCPVQSCPVDDFYEYAPSSPVPCFCAAPLRIGYRLKSPSFSYFAPYRSSFEDYITRSLDLDLYQLSIDSVAWEEGPRLRMYLKLFPSYNDSGSSMFNESEVHRIKGIYSSWHFPRTDFFGPYELLNFTLLGPYANLNVDSKKKKNNVGIKISAVIAAVACALAISAIIILLISKRNMKYQKKISRKRMSTNVSIKIDGMKAFTYKELAIATNKFNISTKVGQGGYGNVYKGILSDETFVAVKRAEEGSLQGQKEFLTEIELLSRLHHRNLVSLIGYCNEKEEQMLVYEFMPNGTLRDWISGKSRKTKGSLNFSMRLRIAMGAAKGILYLHTEANPPIFHRDIKASNILLDSKFTAKVADFGLSRLVPDLYEEGTGPKYVSTVVKGTPGYLDPEYLLTHKLTDKCDVYSLGIVYLELLTGMQPISHGKNIVREVNTARQSGTIYSIIDSRMGLYPSDCLDKFLTLALRCCQDNPEERPSMLDVVRELEDIITMLPEPETLFSDVSLLNSGNIAPPSSATTSTSNVTREEQHMSSYVSGSDLVSDVIPTVVPR* 958
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso18g1762 957 SMART serkin_6 620 896 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso18g1762 957 Pfam Leucine rich repeat N-terminal domain 29 67 IPR013210 -
Gso18g1762 957 ProSitePatterns Protein kinases ATP-binding region signature. 626 648 IPR017441 GO:0005524
Gso18g1762 957 Gene3D Phosphorylase Kinase; domain 1 590 695 - -
Gso18g1762 957 ProSitePatterns Serine/Threonine protein kinases active-site signature. 743 755 IPR008271 GO:0004672|GO:0006468
Gso18g1762 957 PANTHER LEUCINE-RICH REPEAT PROTEIN KINASE FAMILY PROTEIN 10 928 - -
Gso18g1762 957 ProSiteProfiles Protein kinase domain profile. 620 896 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso18g1762 957 Gene3D Transferase(Phosphotransferase) domain 1 696 903 - -
Gso18g1762 957 Pfam Protein kinase domain 621 890 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso18g1762 957 SUPERFAMILY RNI-like 266 379 - -
Gso18g1762 957 Gene3D Ribonuclease Inhibitor 28 190 IPR032675 -
Gso18g1762 957 Gene3D Ribonuclease Inhibitor 293 399 IPR032675 -
Gso18g1762 957 SUPERFAMILY Protein kinase-like (PK-like) 605 914 IPR011009 -
Gso18g1762 957 CDD STKc_IRAK 626 895 - -
Gso18g1762 957 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 10 928 - -
Gso18g1762 957 Gene3D Ribonuclease Inhibitor 191 292 IPR032675 -
Gso18g1762 957 MobiDBLite consensus disorder prediction 917 941 - -
Gso18g1762 957 SUPERFAMILY L domain-like 27 287 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso18g1762 Gso-Chr18 50041508 50051564 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso18g1762 5 904 Receptor kinase-like Gene Family AT5G01950 60.860 0.0 1098
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VIII-1 Gso18g1762 Pkinase 3.3e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso18g1762 - - gmx:100815005 1855.88
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g1762 18 50041508 50051564 Gso9g2248 9 46751861 46761646 GST