Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso18g1759 ATGCCGACTCTAAGAATTCATGGATATGCCTTGCTTGTTTCATCTTGTTTCATCATCCTCATAGCAGCCTCACAAACAGATCCTTCAGAAGTAAATGCACTGATAGACATCAAGAAAAGTTTGATTGATCCCATGGGCAATATGAGGAACTGGAATTCGGGAGATCCGTGTATGGCAAACTGGGCAGGGGTTTGGTGCTCTGATAGGGAGGAGGCTAATGGTTACTTCCATGTCCAAAAGCTCTACTTAATGACTATGAATCTCTCGGGAAGTTTAGCACCCCAGCTTGGTCAGCTATCTCATCTTAAGATACTGTCTTTCATGCGGAATAATTTGACAGGCACAATTCCAAAGGAAATTGGAAATATTACATCATTGGAACTCTTGCTTCTAAGCGGGAATAAGTTATCTGGTACTTTACCAGATGAGCTTGGCAACCTTACGAATTTAGATAGATTCCAAGTTGATGAAAACCAATTGTCAGGTCCTATTCCAGAGTCATTTGTCAAAATGGTCAAAGTTAAACATCTCCACATGAATAACAACTCGTTCAACAATCAACTTCCATCCAAGCTTTCAAAGCTGCCCAATCTTGTGCATTTGCTTGTGGACAACAATAACTTATCTGGTTACCTTCCACCAGAATTCTCTATGTTAGAACGGTTAAGAATACTTCAACTTGATAACAATAATTTCAGTGGGAGTGGGATTCCTTCTACCTATGCAAACTTTTCCAGTTTAGTAAAACTAAGTCTGAGAAACTGCAGTCTGCAAGGAACTATTCCTGATTTCAGTTCAATAGCCAACCTCACCTATCTAGACCTTAGCTGGAATCAGTTTACTGGACATATACCATCAGAACTTGCAGACAATATGACAACTATTGATCTATCCAATAATAATCATCTCGATGGATCAATTCCTCGAAGCTTCATATACCCTCATCTTCAAAAATTGTCACTTGAGAACAATTTACTGTCTGGATCCATCCCTGCTAGCATATGGGAGAACGTGGCCTTAAATACTAAAGATAAACTTACAATTAATCTCCAAAACAACTCGCTATTGGAAGTTCTGGGAAATCTGAACCCCCCAGCAAATGTTACCTTAAGGCTTTCTGGCAATCCAATCTGTAACAATTCTAACATACGAAGTATTGGTCAATATTGTGGACATGTTGGAGGTGAAGATGAAGATGAAGTAGACCAAAACCCAACAAATTCAACAACTGCCTGTCCAGTAGTTCTAGATTGCCAAGCAGATAATTTCTATGAATTACATGTCCCCTCTTTCCCAATTCCTTGCTATTGTGCAGCACCTCTGACAATTGAATACAGGCTGAAAAGTCCAAGTTTTTCTTACTTTCTTCCCTATATAAGTGGATTTATAGCATATATAACTGAGTCCTTAAACTTAGACAACTATCAGTTATCAATAAATTCTTGGGAAGATGGACATCGTATTACCATGTATCTAAAACTGTTTCCTTCATACAATGATCCCGGCCAGTTGTTCAATGCAAGCGAGGTTTATCGCATCAAAACTATATTTACATCATGGCTTTTTCCTCCCAATCATTTTTTTGGACCATATGAACTCCTGAACTTCACACTCATTGGACCTTATGCAAATGCTAAAGATTCGGAGAGGAGGAGTTCCACAAGTGCAGTCACATTAGCTGCTGCTTTAATAGCAGCTGCTGCTCTTTTGGCATTATCTGCTATAATCATTAGCTTGATTTCTACAAGAAATGGAAAATTTCAGCACTTGATTTCCAGGAAATCCCCTAATGTATCTATTAAGATAGACAGTGTGAAAGAATTTACTTTCAGAGAATTGGCCCTTGCTACTAACAATTTTAGCAGCTCAACTAAAGTTGGTCAAGGAGGTTATGGGAATGTCTACAAAGGCATTTTATCTGGTGAAACACTTGTGGCCATTAAACGAGCAGCAGAAGGTTCTTTACAAGGCAAAAAAGAGTTTTTGACTGAGATTGAACTTTTATCAAGGTTACACCATCGAAATCTTGTCTCGCTGATTGGGTACTGCAATGAAGAACAGGAGCAGATGCTGGTCTATGAATTCATGCCCAATGGCACCCTAAGGGACTGGATTTCTGGTAAAAGTGAAAAGGCCAAGGAAAGACAAAATTTTGGTATGGGGTTGAAAATTGCAATGGGTGCAGCCAAAGGGATACTATATCTTCATACAGATGCTGACCCTCCTATATTCCACCGAGATATTAAAGCCGGCAACATACTTCTGGATTCCAAATTTACAGCTAAAGTGGCTGATTTTGGACTGTCACGGCTTGCATCATTCGAAGAAGGAAGTAACAATACTAAATACATGTCAACAGTTGTGAGGGGAACACCAGGTTACCTTGACCCAGAATATGTGTTGACTCAAAAGTTTACTGACAAAAGTGATGTCTATAGCTTAGGAATTGTGTTTCTGGAGCTTTTGACGGGCATGCAACCAATATCACGTGGGAAACACATTATTTACGAGGTTAATCAGGCTTGTCGATCTGGCAAGATATATTCCATTATAGGGAGCAGAATGGGTTTATGTCCATCTGATTGCTTGGACAAGTTTTTATCTCTGGCCCTCAGTTGTTGCCAAGAAAATCCAGAGGAGAGGCCATCAATGCTAGATGTTGTGAGGGAACTAGAAAATATTGTTGCAATGTTATCAGAAAGTGAAGCTAGTTTACCAGATGTTACCTTAGATAATTCAGGTGAAATGGCACCCTCATCATCTTTAGGATCTAACTCAGCAAGGGAGGACCAACACACGTACGCGTATGTGTCAGGAAGTAATCTTGTCAGTGGTGTCATTCCCACCATTGTTCCTCGCTGA 2862 0.3973 MPTLRIHGYALLVSSCFIILIAASQTDPSEVNALIDIKKSLIDPMGNMRNWNSGDPCMANWAGVWCSDREEANGYFHVQKLYLMTMNLSGSLAPQLGQLSHLKILSFMRNNLTGTIPKEIGNITSLELLLLSGNKLSGTLPDELGNLTNLDRFQVDENQLSGPIPESFVKMVKVKHLHMNNNSFNNQLPSKLSKLPNLVHLLVDNNNLSGYLPPEFSMLERLRILQLDNNNFSGSGIPSTYANFSSLVKLSLRNCSLQGTIPDFSSIANLTYLDLSWNQFTGHIPSELADNMTTIDLSNNNHLDGSIPRSFIYPHLQKLSLENNLLSGSIPASIWENVALNTKDKLTINLQNNSLLEVLGNLNPPANVTLRLSGNPICNNSNIRSIGQYCGHVGGEDEDEVDQNPTNSTTACPVVLDCQADNFYELHVPSFPIPCYCAAPLTIEYRLKSPSFSYFLPYISGFIAYITESLNLDNYQLSINSWEDGHRITMYLKLFPSYNDPGQLFNASEVYRIKTIFTSWLFPPNHFFGPYELLNFTLIGPYANAKDSERRSSTSAVTLAAALIAAAALLALSAIIISLISTRNGKFQHLISRKSPNVSIKIDSVKEFTFRELALATNNFSSSTKVGQGGYGNVYKGILSGETLVAIKRAAEGSLQGKKEFLTEIELLSRLHHRNLVSLIGYCNEEQEQMLVYEFMPNGTLRDWISGKSEKAKERQNFGMGLKIAMGAAKGILYLHTDADPPIFHRDIKAGNILLDSKFTAKVADFGLSRLASFEEGSNNTKYMSTVVRGTPGYLDPEYVLTQKFTDKSDVYSLGIVFLELLTGMQPISRGKHIIYEVNQACRSGKIYSIIGSRMGLCPSDCLDKFLSLALSCCQENPEERPSMLDVVRELENIVAMLSESEASLPDVTLDNSGEMAPSSSLGSNSAREDQHTYAYVSGSNLVSGVIPTIVPR* 954
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso18g1759 953 Gene3D Ribonuclease Inhibitor 27 191 IPR032675 -
Gso18g1759 953 PANTHER LEUCINE-RICH REPEAT PROTEIN KINASE FAMILY PROTEIN 10 930 - -
Gso18g1759 953 Gene3D Ribonuclease Inhibitor 266 412 IPR032675 -
Gso18g1759 953 SUPERFAMILY RNI-like 268 382 - -
Gso18g1759 953 SMART serkin_6 620 898 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso18g1759 953 Gene3D Ribonuclease Inhibitor 196 265 IPR032675 -
Gso18g1759 953 ProSiteProfiles Protein kinase domain profile. 620 895 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso18g1759 953 ProSitePatterns Protein kinases ATP-binding region signature. 626 648 IPR017441 GO:0005524
Gso18g1759 953 ProSitePatterns Serine/Threonine protein kinases active-site signature. 743 755 IPR008271 GO:0004672|GO:0006468
Gso18g1759 953 Pfam Protein kinase domain 621 889 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso18g1759 953 SMART LRR_typ_2 267 291 IPR003591 -
Gso18g1759 953 SMART LRR_typ_2 195 218 IPR003591 -
Gso18g1759 953 SMART LRR_typ_2 123 147 IPR003591 -
Gso18g1759 953 SMART LRR_typ_2 219 243 IPR003591 -
Gso18g1759 953 SMART LRR_typ_2 313 337 IPR003591 -
Gso18g1759 953 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 16 - -
Gso18g1759 953 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 10 930 - -
Gso18g1759 953 Pfam Leucine rich repeat N-terminal domain 28 67 IPR013210 -
Gso18g1759 953 SUPERFAMILY L domain-like 25 290 - -
Gso18g1759 953 CDD STKc_IRAK 626 894 - -
Gso18g1759 953 Gene3D Transferase(Phosphotransferase) domain 1 696 909 - -
Gso18g1759 953 SUPERFAMILY Protein kinase-like (PK-like) 597 891 IPR011009 -
Gso18g1759 953 Gene3D Phosphorylase Kinase; domain 1 591 695 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso18g1759 Gso-Chr18 49986270 50003221 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso18g1759 5 905 Receptor kinase-like Gene Family AT5G01950 56.031 0.0 965
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VIII-1 Gso18g1759 Pkinase 2.1e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso18g1759 - - gmx:100798809 1863.97