Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso18g1729 ATGCAATTCAGCATGTGTGTGTTGTTTCTGATCCTCCTTGCACCGGTTATGTTGGTGTTTTCTGTGGACCCTGGTTTCAATGATGATGTGTTGGGGTTGATTGTGTTCAAGGCTGGTTTGGATGACCCCAAAAGGAAACTCTCTTCTTGGAATGAGGATGATAACAGCCCTTGCAACTGGGAAGGTGTGAAGTGTGATCCTTCATCTAATAGGGTCACTGGTCTTGTTCTTGATGGTTTCTCTCTTTCTGGGCATGTTGATAGGGGCTTGTTGAGGTTGCAATCCCTTCAAATTCTCTCACTTTCAAGGAACAACTTCACTGGGCCTATAAACCCTGATCTTCACCTCCTTGGGAGTTTACAGGTTGTGGACTTGAGTGACAACAACCTCTCTGGGGAGATCGCAGAAGGGTTTTTCCAACAATGTGGTTCTCTAAGAACAGTTTCATTTGCCAAGAACAATCTCACTGGTAAGATTCCCGAGTCCTTGAGCTCATGCTCCAATTTGGCAAGTGTTAACTTCTCCTCTAATCAGCTCCATGGGGAATTGCCTAATGGGGTGTGGTTTTTAAGGGGGCTGCAGTCACTTGATCTGTCAGATAACTTGCTTGAGGGAGAGATTCCTGAAGGGATTCAGAATTTGTATGATATCAGGGAGTTGAGTCTTCAGAGGAACCGGTTCAGTGGAAGGCTTCCTGGGGACATTGGAGGGTGCATTCTTCTGAAATCACTTGACTTGAGTGGTAATTTTCTCTCTGGGGAGCTGCCTCAGTCATTGCAAAGACTCACTTCATGCACATCACTTAGTCTGCAGGGAAATTCATTCACTGGAGGCATTCCTGAATGGATTGGAGAATTGAAGAATCTAGAGGTGTTGGATCTTTCTGCCAATGGATTCTCTGGTTGGATTCCAAAGTCATTAGGGAATCTTGACTCTTTGCATAGATTGAATTTGTCCAGGAATCAGTTGACAGGAAACTTGCCTGATTCCATGATGAACTGCACTAGGCTTTTGGCTCTTGACATCAGTCACAATCACTTGGCAGGCTATGTTCCTTCATGGATTTTTAGGATGGGTGTGCAAAGTATCTCTCTTTCTGGGAATGGCTTCAGCAAGGGCAATTATCCTTCACTCAAGCCCACACCTGCATCTTATCATGGTCTTGAGGTTTTGGATTTGTCATCCAATGCATTTTCTGGCGTGCTTCCATCTGGCATTAGGGGACTTAGTAGCCTCCAAGTCTTTAATATTTCCACCAACAATATCTCTGGTTCTATTCCTGTGGGTATAGGAGACCTTAAGTCTTTGTACATTGTTGACCTAAGTGACAACAAGCTTAATGGAAGCATTCCTTCTGAAATAGAAGGGGCAACTTCACTCAGTGAGCTAAGGCTGCAAAAGAACTTCTTGGGTGGGAGAATTCCAGCCCAAATTGACAAGTGCTCATCTCTAACATTTTTGATACTTTCTCACAACAAGCTTACTGGTTCAATCCCAGCAGCCATTGCAAACCTCACCAATCTTCAGTATGTAGATTTGTCATGGAATGAACTCTCTGGAAGTTTACCAAAGGAGTTAACAAATCTTTCCCATCTTTTCTCATTTAATGTATCCTACAACCACCTTGAAGGTGAACTACCTGTCGGAGGCTTCTTCAACACCATCTCCTCCTCATCTGTCTCCGGTAACCCGTTGTTGTGTGGTTCTGTCGTCAACCACTCCTGTCCATCTGTTCATCCCAAACCTATTGTCCTAAACCCCAATTCTTCTGGTTCCAACTCCAGCATTTCCTCGCAGAACCATCGGCATAAGATCATACTAAGTATCTCCGCTCTTATTGCTATTGGAGCAGCTGCTTTTATTGCCATTGGTGTTGTGGCTGTTACTGTCCTAAATATCCACGTTCGTTCCTCAATGGAACATTCAGCTGCTCCTTTTGCATTTTCTGGTGGTGAGGACTATAGCTGCTCACCGGCAAATGATCCAAACTATGGCAAGCTTGTCATGTTTTCTGGTGATGCAGACTTTGCTGATGGAGCTCATAATCTTCTCAATAAAGAAAGTGAAATAGGCCGTGGTGGATTTGGAGTTGTTTATCGAACTTTCCTTCGTGATGGGCATGCGGTTGCAATCAAGAAGCTCACAGTCTCCAGTTTGATCAAGTCCCAAGAAGACTTTGATAGAGAAATTAAAAAACTTGGGAATGTCAAGCACCCGAATCTCGTGGCACTTGAAGGTTATTATTGGACTTCATCCTTGCAGCTCCTTATTTATGAGTACCTATCCAGTGGGAGTTTGCATAAAGTTCTACATGATGATAGCAGCAAAAATGTCTTCTCTTGGCCACAAAGGTTCAAGATCATTCTTGGCATGGCAAAAGGGTTGGCCCATTTGCACCAAATGAACATAATCCACTACAATCTTAAATCAACCAACGTGCTGATTGATTGTTCTGGTGAGCCAAAGGTCGGAGACTTTGGCTTGGTGAAACTCTTGCCAATGCTAGACCATTGTGTTTTGAGCAGCAAAGTTCAAAGTGCACTCGGATACATGGCACCCGAGTTTGCTTGCCGTACAGTCAAGATAACTGAGAAATGTGACGTATATGGTTTCGGGATCCTGGTGCTGGAGATCGTGACAGGAAAAAGGCCTGTGGAGTACATGGAGGATGATGTGGTGGTTCTTTGTGACATGGTGAGGGGTGCATTGGAAGAAGGCAAGGTGGAGCAATGTGTTGATGGAAGGCTCCTTGGTAACTTTGCAGCAGAGGAAGCAATTCCTGTGATAAAATTGGGGTTGATTTGTGCATCACAAGTGCCATCAAACCGTCCAGAAATGGCTGAGGTAGTCAACATATTAGAGTTAATCCAATGCCCTTCAGAAGGACAAGAGGAATTAGAATGA 2904 0.4418 MQFSMCVLFLILLAPVMLVFSVDPGFNDDVLGLIVFKAGLDDPKRKLSSWNEDDNSPCNWEGVKCDPSSNRVTGLVLDGFSLSGHVDRGLLRLQSLQILSLSRNNFTGPINPDLHLLGSLQVVDLSDNNLSGEIAEGFFQQCGSLRTVSFAKNNLTGKIPESLSSCSNLASVNFSSNQLHGELPNGVWFLRGLQSLDLSDNLLEGEIPEGIQNLYDIRELSLQRNRFSGRLPGDIGGCILLKSLDLSGNFLSGELPQSLQRLTSCTSLSLQGNSFTGGIPEWIGELKNLEVLDLSANGFSGWIPKSLGNLDSLHRLNLSRNQLTGNLPDSMMNCTRLLALDISHNHLAGYVPSWIFRMGVQSISLSGNGFSKGNYPSLKPTPASYHGLEVLDLSSNAFSGVLPSGIRGLSSLQVFNISTNNISGSIPVGIGDLKSLYIVDLSDNKLNGSIPSEIEGATSLSELRLQKNFLGGRIPAQIDKCSSLTFLILSHNKLTGSIPAAIANLTNLQYVDLSWNELSGSLPKELTNLSHLFSFNVSYNHLEGELPVGGFFNTISSSSVSGNPLLCGSVVNHSCPSVHPKPIVLNPNSSGSNSSISSQNHRHKIILSISALIAIGAAAFIAIGVVAVTVLNIHVRSSMEHSAAPFAFSGGEDYSCSPANDPNYGKLVMFSGDADFADGAHNLLNKESEIGRGGFGVVYRTFLRDGHAVAIKKLTVSSLIKSQEDFDREIKKLGNVKHPNLVALEGYYWTSSLQLLIYEYLSSGSLHKVLHDDSSKNVFSWPQRFKIILGMAKGLAHLHQMNIIHYNLKSTNVLIDCSGEPKVGDFGLVKLLPMLDHCVLSSKVQSALGYMAPEFACRTVKITEKCDVYGFGILVLEIVTGKRPVEYMEDDVVVLCDMVRGALEEGKVEQCVDGRLLGNFAAEEAIPVIKLGLICASQVPSNRPEMAEVVNILELIQCPSEGQEELE* 968
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso18g1729 967 Pfam Leucine rich repeat 288 347 IPR001611 GO:0005515
Gso18g1729 967 Pfam Leucine rich repeat 387 446 IPR001611 GO:0005515
Gso18g1729 967 Pfam Leucine rich repeat 459 518 IPR001611 GO:0005515
Gso18g1729 967 SMART LRR_typ_2 409 433 IPR003591 -
Gso18g1729 967 SMART LRR_typ_2 214 238 IPR003591 -
Gso18g1729 967 SMART LRR_typ_2 190 213 IPR003591 -
Gso18g1729 967 SMART LRR_typ_2 529 553 IPR003591 -
Gso18g1729 967 SMART LRR_typ_2 117 141 IPR003591 -
Gso18g1729 967 SMART LRR_typ_2 310 334 IPR003591 -
Gso18g1729 967 SMART LRR_typ_2 505 528 IPR003591 -
Gso18g1729 967 SMART LRR_typ_2 385 408 IPR003591 -
Gso18g1729 967 SMART LRR_typ_2 286 309 IPR003591 -
Gso18g1729 967 SMART LRR_sd22_2 505 531 - -
Gso18g1729 967 SMART LRR_sd22_2 190 213 - -
Gso18g1729 967 SMART LRR_sd22_2 286 312 - -
Gso18g1729 967 SMART LRR_sd22_2 385 411 - -
Gso18g1729 967 SMART LRR_sd22_2 433 456 - -
Gso18g1729 967 Gene3D Transferase(Phosphotransferase) domain 1 761 965 - -
Gso18g1729 967 ProSiteProfiles Protein kinase domain profile. 684 956 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso18g1729 967 Pfam Leucine rich repeat N-terminal domain 27 66 IPR013210 -
Gso18g1729 967 SUPERFAMILY L domain-like 45 370 - -
Gso18g1729 967 Gene3D Ribonuclease Inhibitor 307 581 IPR032675 -
Gso18g1729 967 CDD STKc_IRAK 690 956 - -
Gso18g1729 967 Pfam Leucine Rich repeat 119 138 IPR001611 GO:0005515
Gso18g1729 967 Gene3D Phosphorylase Kinase; domain 1 673 760 - -
Gso18g1729 967 Gene3D Ribonuclease Inhibitor 190 239 IPR032675 -
Gso18g1729 967 Gene3D Ribonuclease Inhibitor 240 306 IPR032675 -
Gso18g1729 967 SUPERFAMILY L domain-like 361 568 - -
Gso18g1729 967 ProSitePatterns Protein kinases ATP-binding region signature. 690 713 IPR017441 GO:0005524
Gso18g1729 967 PANTHER LEUCINE-RICH RECEPTOR-LIKE KINASE FAMILY PROTEIN 5 958 - -
Gso18g1729 967 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 5 958 - -
Gso18g1729 967 SUPERFAMILY Protein kinase-like (PK-like) 685 957 IPR011009 -
Gso18g1729 967 Gene3D Ribonuclease Inhibitor 27 189 IPR032675 -
Gso18g1729 967 Pfam Protein kinase domain 685 892 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso18g1729 967 Pfam Leucine Rich Repeat 241 262 IPR001611 GO:0005515
Gso18g1729 967 Pfam Leucine Rich Repeat 193 214 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso18g1729 Gso-Chr18 49666826 49671166 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso18g1729 4 964 Receptor kinase-like Gene Family AT5G01890 62.293 0.0 1134
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VII-1 Gso18g1729 Pkinase 2.5e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso18g1729 - - gmx:100790365 1876.68