Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso18g1718 ATGCGAGAGGCGCAGAACGACACCGTTGCAACAGAATTCGCAACGACAACAAACGACGAGGAGGTTCCGTCCGGCGTCGTTTTGTTCGGGAAGTACGAGTTGCGAAGGTTGCTGGGAGTTGGCGCATTCGCGAAGGTGTACCACGCGACGAGCGTGGACGACACGCACCAGAGCGTGGCGTTGAAGGCCGTGAGCAAGAACAAGGTCCTGAACGGAGGCTTCGCCGCCAACGTGGAGCGCGAGATCTCCATCATGCGCCGCCTCCACCACCCCAACATCATTAACCTCTTCGAAGTACTCGCGACCAAAACAAAAATCTACTTCGTCATGGAGTTCGCCGCCGGCGGGGAGCTCTTCCACGAGGTCGCCGGGAAGGGACGGCTCACGGAGGAAACCGCCAGATTTTACTTCCGGCAGCTGATCTCCGCCGTGAAGCACTGCCACTCCCGCGGCGTCTTCCACCGCGACCTCAAGCTCGACAACCTCTTACTCGACGAGGATGGGAACCTTAAGGTCTCCGATTTCGGGTTGAGTGCGGTCACGGGTCAGATCCGACCCGACGGGCTGTTGCACACGGTTTGTGGAACCCCTACCTACGTGGCGCCCGAGATTCTTGCGAAGAGAGGCTACGATGGCGCCAAGGTGGATCTTTGGTCGTGCGGCGTCGTTTTGTTCGCGCTCATTGCTGGCTATTTACCCTTCAATGACTACAATCCCTCCGTTCTGTATAGGAAGATTTACCGCGGTCAATTCCGGTTCCCGAGGTGGATATCACATGATCTGAGATTCCTCTTATCACGACTTTTGGACACAAATCCCAAGACAAGGATAACCGTCGATGAGATCTATAAGGACACGTGGTTCAATGCAGATGGCGAGTATCGGTTCAACCGGGTTTTGGTCAAGGAGAGTGAGTGTGAAAAGCAATTAGGTCGAACCGGATTCAAGTCTTTGAATGCTTTCGACTTAATTTCTTTCTCAACCGGGTTGGATATGTCGGGTCTTTTTGAGGACCCGACCGGATCGAATTTGGTCGAACGGGTTGTTTCGACAGTGGTGCCAGAGAAAATTATGGAGAGAGTGGAGGCAATGACGGAGGAGGGAAGGGTGGTGGTGAGAAGGGAGAAGAATGGTGGTGGAGCAAAGCTAGAAGGGCAGGATGGTAATTTGATTGGTATTGTTGTGGTTTACCAATTAACCGATGAGCTGGTGGTGGTTGAAATGAAAAGAAGTGAAAAGGGAGGGGGGTTTGGGGGGCAGTTTTGGAAAGATAAACTGCGGCCACTGCTTCTTGAATTGGCAAGTGAATTGGAAGAGCCGGTCTCTCGGTGA 1332 0.5353 MREAQNDTVATEFATTTNDEEVPSGVVLFGKYELRRLLGVGAFAKVYHATSVDDTHQSVALKAVSKNKVLNGGFAANVEREISIMRRLHHPNIINLFEVLATKTKIYFVMEFAAGGELFHEVAGKGRLTEETARFYFRQLISAVKHCHSRGVFHRDLKLDNLLLDEDGNLKVSDFGLSAVTGQIRPDGLLHTVCGTPTYVAPEILAKRGYDGAKVDLWSCGVVLFALIAGYLPFNDYNPSVLYRKIYRGQFRFPRWISHDLRFLLSRLLDTNPKTRITVDEIYKDTWFNADGEYRFNRVLVKESECEKQLGRTGFKSLNAFDLISFSTGLDMSGLFEDPTGSNLVERVVSTVVPEKIMERVEAMTEEGRVVVRREKNGGGAKLEGQDGNLIGIVVVYQLTDELVVVEMKRSEKGGGFGGQFWKDKLRPLLLELASELEEPVSR* 444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso18g1718 443 ProSiteProfiles NAF domain profile. 313 337 IPR018451 GO:0007165
Gso18g1718 443 CDD CIPK_C 319 428 - -
Gso18g1718 443 Gene3D Transferase(Phosphotransferase) domain 1 26 318 - -
Gso18g1718 443 Gene3D Kinase associated domain 1, KA1 319 434 - -
Gso18g1718 443 PANTHER - 13 441 - -
Gso18g1718 443 SMART serkin_6 32 288 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso18g1718 443 ProSitePatterns Serine/Threonine protein kinases active-site signature. 152 164 IPR008271 GO:0004672|GO:0006468
Gso18g1718 443 PANTHER CBL-INTERACTING SERINE/THREONINE-PROTEIN KINASE 14 13 441 - -
Gso18g1718 443 SUPERFAMILY Protein kinase-like (PK-like) 28 289 IPR011009 -
Gso18g1718 443 Pfam NAF domain 316 373 IPR004041 GO:0007165
Gso18g1718 443 Pfam Protein kinase domain 32 288 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso18g1718 443 ProSiteProfiles Protein kinase domain profile. 32 288 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso18g1718 443 ProSitePatterns Protein kinases ATP-binding region signature. 38 62 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso18g1718 Gso-Chr18 49549789 49551613 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso18g1718 27 436 CBL-interacting serine-threonine protein kinases AT2G30360 55.529 7.32e-158 451
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Gso18g1718 Pkinase 3.7e-68 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso18g1718 - K12761 gmx:100788245 854.744