Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Gso18g1698 | ATGGCAGATCCTGCTAGTTATGGGAGTCTTGAGCGTGATATTGAACAAGCACTCATTGCCATAAAAAAAGGGACTCAGTTAATAAAATACAGTCGAAAAACCAAGCCAAAAGTTTGCCCATTCAGACTTTCTCTGGATGAAACAACACTAATTTGGATTTCTCACAAGAAGGAAAGGAATTTGAAATTATCTTCAGTTTCACGTATTATCCCTGGACAAAGAACTGTTGTCTTTCGAAGATATTTACAGCCAGAAAAAGATTATCTATCATTTTCACTTGTTTATAATAACGGGGAGCGAACACTTGATTTGATATGCAAGGACCAAGATGAGGCAGAGGTATGGTTTACAGGCCTTAAGACATTAATTTCTACTGGAAAGCTTAGGCGCATTGGAAGTGAATTATTTAATGATGGTGCTGATTTTATTCCAAACGGTGGTCCTTTTGGTGCAGCACTAGAATTTGCTATAAGCATTTCTCATAACAAGAAGGTCTCTTTTGATTTTGCTTCTCGTGAGCCTTCATTGAATTTGGCAACCACAGATGTGGGGTTAGAGCGACGTGCTAATAACATGCAACCAAGAACAAGCATTGGAGATGGTTTTCGTGTCAGCGTGTCGAGTACACCGAGTGTTTTGAGTACAGGGTCAGGACCAGATGACATAGAATCACTTGGTGATGTTTATATATGGGGAGAGGTTTGGGCAAGTGGGGTTTCACCTGATGGATTTTCCACACAAGCCCCTTCCACAACAGATGTGTTGATTCCTAAGCCATTGGAGTCAAGTGTTGTTCTTGATGTTCAACAGATTGCATCTGGTGTGAGGCACATTGCTTTGGTAACAAGGCAAGGGGAGGTTTTTACTTGGGGAGAAGAATGTGGGGGAAGACTTGGCCATGGAATTGATAGAGATTTCGGTCGCCCTCAACTTGTTGAGTTTTTGGCAGTTACTAGTATGGATTTTGTTGCATGTGGAGAGAATCATACATGTGCTGTTTCTACATATGATGATATTTTCTCATGGGGTGATGGTACATACAATGTTGGACTTCTTGGTCATGGAACTGATGTTAGCCATTGGATACCAAAAAGAATTAGTACCGGTCCTTTAGAAGGGCTTCAAGTTATATCCATTGCATGTGGCACATGGCATTCAGCACTAGCAACTTCTAATGGAAAACTTTTTACCTTTGGTGATGGAACATTTGGAGTTTTAGGCCATGGAAACAGAGAAAGTATTCCATATCCAAAGGAGGTGAAATTTTTAAATGGATCGAAAACCATTAAGGTTGCATGTGGAGTGTGGCACACGGCAGCTATTGTAGAGGTTACTTTTCAATCCAATTCAAACGTTTCATCCAGGAAGCTTTTCACTTGGGGAGATGGCGACAAATATCGTTTAGGACATGGGAACAAGGGAACATACCTTCAACCAACTTGTGTCTCTGCACTTATTAAATATAATTTCCACCAGATAGCATGTGGACACACCATGACTGTTGCCCTCACTACATCTGGTCACGTCTTTACTATGGGAAGCAATGAAAATGGTCAACTAGGAAACCGTTTGGCTGATGAAAAAGTACCTATCCTAGTGCAAGACAAGTTGGTGGGTGAATTTGTTGAGGAAATAGCATGTGGTTCTCATCATGTTGCTGCCTTGACATCAAGAAGTGAACTATATACATGGGGGAAAGGTGCCAATGGGAGATTGGGACATGGAGACATAGAGGATAGAAAATCCCCAACATTAGTAGAATCCTTAAGAGATAGGCATGTAAAGAATATCTCTTGTGGCTCAAACTTTACATCTTGCATATGCATTCATAAATGGGTCTCTGGAGTTGACCAATCTGTTTGCACTGGTTGTAGACAACCATTTGGTTTCACTAGAAAGAGGCATAATTGCTACAATTGTGGATTAGTGCATTGCCATGGTTGTAGTTCAAAAAAGGTTTTGAAAGCATCATTGGCTCCAACACCGGGAAAACCTCATCGCGTGTGTGACTCTTGTTATAATAAGCTTAAAGCTGTTGAGGCATGTGCTAGTTCTAATCTTCATAGGAAAATGACCACAACACCTCGCTATTCCATAGATGGTAGGGAAAGATTTGGTCAAGGAGAAGTAAAGTCTTCAAGACTTATTTTGCCTCCTATCACAGAACCAATGAAATTTCATCAGATAATGGCTAATAAGATGGGAAACAAACATGATTATTCTTCCATGTCTCCAACTTCCCAAGTTCCATCACTTTTGCAATTGAATGATATTGCATTTGGTAACTCAATAAGTTCAACTCAAAATGTTTTGAAGTCTGCTATAGCTCCTAGTCCAACACCAACTCCACCTGTCAACCAAAGACCAGCATCTCCTTATTCAAGAAGGGCAAGCCCTCCACGTTCTAGAGCTTCAGGATTTTCTAGAAGTCTTGTTGATAGTTTGAGGAAGACAAATGAACTTTTGAATCAAGAAGTTTCAAAAATGCAAAATCAGATTCGAAGTTCGAAGCTAAGAAATGACATGGAAATTCAAAAGCTCCAAAAAACTATCACCGAAGCTACCTCCTTTGCTGTAGAGGAATCCTCTAAGCATAAAGCCATGAAAGAATTTTTTGAGTCTACGGTGGATCAGATGAAGGAAATGATTGAGAAGTTGCCTCCAGATGTTTTAGATAGTGAAAATTGGAAAATCATGCTTACTCGAGCTGAGGATTTTCTAAAAGAAAAATCAGAATTTGAAACACCATCAAATGTGAAGTCTCAACAACAACATGAACTTAATACACCTAACTCATATAGTAGCTCTTCTAAATTGCAAGAACATGGAATAGAAGAAAATAATGAAACGGTAGGAGTTGACCCATCATCACAAGATGAAGGAAACGTTCAAGTAAGCAATAGCTCATCTTTATCAAACAATGAAGCATCAATGCCTTCACAAAATGATTCAAAATCACAACACTCTTCAAGGCCTGGCAAAGAAGGAGAAATGCAGGTCATGGAACAATTTGAACCTGGGGTACATGTGACACTAATAGTAAAGCCTGGTGGTGTCAGAATTTTCAAACGAGTCAAATTCAGTAAACGAAGGTTCCATGAACATCAAGCAGAAGAATGGTGGAGCAAAAATAAAGATAGAGTGCTTAGGAAATATAGTACTCCTCAAGCTACAAATTTTGAAGGTATTAGGTCATCTAACACTCTACCACCACCACCTACAGAAGAAAATATTGAGACAATGTCTTCCTAA | 3252 | 0.3951 | MADPASYGSLERDIEQALIAIKKGTQLIKYSRKTKPKVCPFRLSLDETTLIWISHKKERNLKLSSVSRIIPGQRTVVFRRYLQPEKDYLSFSLVYNNGERTLDLICKDQDEAEVWFTGLKTLISTGKLRRIGSELFNDGADFIPNGGPFGAALEFAISISHNKKVSFDFASREPSLNLATTDVGLERRANNMQPRTSIGDGFRVSVSSTPSVLSTGSGPDDIESLGDVYIWGEVWASGVSPDGFSTQAPSTTDVLIPKPLESSVVLDVQQIASGVRHIALVTRQGEVFTWGEECGGRLGHGIDRDFGRPQLVEFLAVTSMDFVACGENHTCAVSTYDDIFSWGDGTYNVGLLGHGTDVSHWIPKRISTGPLEGLQVISIACGTWHSALATSNGKLFTFGDGTFGVLGHGNRESIPYPKEVKFLNGSKTIKVACGVWHTAAIVEVTFQSNSNVSSRKLFTWGDGDKYRLGHGNKGTYLQPTCVSALIKYNFHQIACGHTMTVALTTSGHVFTMGSNENGQLGNRLADEKVPILVQDKLVGEFVEEIACGSHHVAALTSRSELYTWGKGANGRLGHGDIEDRKSPTLVESLRDRHVKNISCGSNFTSCICIHKWVSGVDQSVCTGCRQPFGFTRKRHNCYNCGLVHCHGCSSKKVLKASLAPTPGKPHRVCDSCYNKLKAVEACASSNLHRKMTTTPRYSIDGRERFGQGEVKSSRLILPPITEPMKFHQIMANKMGNKHDYSSMSPTSQVPSLLQLNDIAFGNSISSTQNVLKSAIAPSPTPTPPVNQRPASPYSRRASPPRSRASGFSRSLVDSLRKTNELLNQEVSKMQNQIRSSKLRNDMEIQKLQKTITEATSFAVEESSKHKAMKEFFESTVDQMKEMIEKLPPDVLDSENWKIMLTRAEDFLKEKSEFETPSNVKSQQQHELNTPNSYSSSSKLQEHGIEENNETVGVDPSSQDEGNVQVSNSSSLSNNEASMPSQNDSKSQHSSRPGKEGEMQVMEQFEPGVHVTLIVKPGGVRIFKRVKFSKRRFHEHQAEEWWSKNKDRVLRKYSTPQATNFEGIRSSNTLPPPPTEENIETMSS* | 1084 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Gso18g1698 | 1083 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 285 | 333 | IPR000408 | - | |
Gso18g1698 | 1083 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 392 | 441 | IPR000408 | - | |
Gso18g1698 | 1083 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 457 | 503 | IPR000408 | - | |
Gso18g1698 | 1083 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 560 | 607 | IPR000408 | - | |
Gso18g1698 | 1083 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 506 | 555 | IPR000408 | - | |
Gso18g1698 | 1083 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 338 | 388 | IPR000408 | - | |
Gso18g1698 | 1083 | MobiDBLite | consensus disorder prediction | 1054 | 1083 | - | - | |
Gso18g1698 | 1083 | ProSiteProfiles | PH domain profile. | 91 | 124 | IPR001849 | - | |
Gso18g1698 | 1083 | PANTHER | CHROMOSOME CONDENSATION REGULATOR RCC1 REPEAT PROTEIN | 13 | 1060 | - | - | |
Gso18g1698 | 1083 | ProSitePatterns | Regulator of chromosome condensation (RCC1) signature 2. | 431 | 441 | IPR000408 | - | |
Gso18g1698 | 1083 | CDD | PH_PLC_plant-like | 12 | 124 | - | - | |
Gso18g1698 | 1083 | PANTHER | REGULATOR OF CHROMOSOME CONDENSATION | 13 | 1060 | - | - | |
Gso18g1698 | 1083 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 285 | 336 | IPR000408 | - | |
Gso18g1698 | 1083 | MobiDBLite | consensus disorder prediction | 911 | 997 | - | - | |
Gso18g1698 | 1083 | Pfam | Pleckstrin homology domain | 16 | 123 | IPR001849 | - | |
Gso18g1698 | 1083 | ProSitePatterns | Regulator of chromosome condensation (RCC1) signature 2. | 271 | 281 | IPR000408 | - | |
Gso18g1698 | 1083 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 393 | 444 | IPR000408 | - | |
Gso18g1698 | 1083 | CDD | FYVE_like_SF | 621 | 673 | - | - | |
Gso18g1698 | 1083 | Pfam | Transcription factor BRX N-terminal domain | 860 | 895 | IPR027988 | - | |
Gso18g1698 | 1083 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 507 | 558 | IPR000408 | - | |
Gso18g1698 | 1083 | SUPERFAMILY | PH domain-like | 14 | 123 | - | - | |
Gso18g1698 | 1083 | Coils | Coil | 812 | 839 | - | - | |
Gso18g1698 | 1083 | ProSiteProfiles | Zinc finger FYVE/FYVE-related type profile. | 615 | 677 | IPR017455 | - | |
Gso18g1698 | 1083 | MobiDBLite | consensus disorder prediction | 916 | 941 | - | - | |
Gso18g1698 | 1083 | Pfam | Transcription factor regulating root and shoot growth via Pin3 | 998 | 1052 | IPR013591 | - | |
Gso18g1698 | 1083 | Pfam | FYVE zinc finger | 611 | 677 | IPR000306 | GO:0046872 | |
Gso18g1698 | 1083 | Gene3D | - | 451 | 622 | IPR009091 | - | |
Gso18g1698 | 1083 | Gene3D | - | 12 | 129 | IPR011993 | - | |
Gso18g1698 | 1083 | SMART | fyve_4 | 609 | 678 | IPR000306 | GO:0046872 | |
Gso18g1698 | 1083 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 559 | 610 | IPR000408 | - | |
Gso18g1698 | 1083 | Gene3D | - | 205 | 450 | IPR009091 | - | |
Gso18g1698 | 1083 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 337 | 392 | IPR000408 | - | |
Gso18g1698 | 1083 | ProSiteProfiles | BRX domain profile. | 998 | 1053 | IPR013591 | - | |
Gso18g1698 | 1083 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 455 | 506 | IPR000408 | - | |
Gso18g1698 | 1083 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 623 | 683 | IPR013083 | - | |
Gso18g1698 | 1083 | PRINTS | Chromosome condensation regulator RCC1 signature | 211 | 227 | IPR000408 | - | |
Gso18g1698 | 1083 | PRINTS | Chromosome condensation regulator RCC1 signature | 337 | 353 | IPR000408 | - | |
Gso18g1698 | 1083 | PRINTS | Chromosome condensation regulator RCC1 signature | 379 | 395 | IPR000408 | - | |
Gso18g1698 | 1083 | PRINTS | Chromosome condensation regulator RCC1 signature | 395 | 409 | IPR000408 | - | |
Gso18g1698 | 1083 | PRINTS | Chromosome condensation regulator RCC1 signature | 496 | 514 | IPR000408 | - | |
Gso18g1698 | 1083 | PRINTS | Chromosome condensation regulator RCC1 signature | 554 | 575 | IPR000408 | - | |
Gso18g1698 | 1083 | SUPERFAMILY | FYVE/PHD zinc finger | 611 | 687 | IPR011011 | - | |
Gso18g1698 | 1083 | MobiDBLite | consensus disorder prediction | 950 | 987 | - | - | |
Gso18g1698 | 1083 | MobiDBLite | consensus disorder prediction | 774 | 810 | - | - | |
Gso18g1698 | 1083 | SUPERFAMILY | RCC1/BLIP-II | 226 | 612 | IPR009091 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Gso18g1698 | Gso-Chr18 | 49232839 | 49240289 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Gso18g1698 | 995 | 1053 | Major Intrinsic Protein MIP | AT1G31880 | 38.983 | 4.75e-09 | 57.8 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Gso18g1698 | - | - | gmx:100779684 | 2127.44 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Gso18g1698 | 18 | 49232839 | 49240289 | Gso9g2298 | 9 | 47238923 | 47244605 | GST |