Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso18g1686 ATGGGAGATCATAGTAACTGGGAAACTTCTGAACTTAGTCATAATAATCATCATCAAAATCATCAAGTTGGACTTGATGTTCTTAAATTCAAGTCTGTTCAACCTCCCTCACTACCCCTCTCTCCCTCTCCAATCTCCCCTTCTTCTTACTTGAACTTTTCATCTGCTTTCAGCCCTTCTGAGTTGTTGAACTCACCTTTGTTTTTTCCTTCTCCAAATATTTTTGCTTCTCCTACTACTGAGGCCTTGGTTGGCCAGAGCTTCAACTGGAGGAACGGTTCAGGTGAAGAACAACAGCGTGGCAAGGAGGATGAGAAAAACTACTCTGACTTCTCTTTCCAAAGCCAAATTCAATCTTCCTTAAACATGTTTCAAGTGGAACCGCTTAAGAAACAAGACATGTGGAAATTCAATGAACCTACAAAGCAGTCTGATTTTTCATCTGAGAGGACAGCAACAAAATCTGAATACCCTTCAATTCAGAAATTTTCCTCAGAAATGGCTGCTGGAAAACCAGAAATACAAAGTAATTCAGTTCCAGGGTCTGGTTATTTTGACTATACAAGTGCATCTCTGTCTGTTAGAGAACAAAAGAGAGCAGAAGATGGGTTCAACTGGAGAAAATATGGACAGAAACAAGTGAAAGGGAGTGAAAATCCTCGTAGTTATTACAAGTGCACACATCCAAATTGCTCAGTGAAGAAGAAAGTGGAGAAGACTTTGGAAGGACAAATCACTGAAATAGTATATAAGGGCCAACATAACCACCCTAAACTGCAGTCTACTAGAAGAACAAACTCTCAATCAATTAATCAACCTTCTTCATCGTGCACAAATTCAGGGATATCTGATCAATCAGTGGTGACCCTAGGAAATCCACAAATGGATCATTTCTCCATACAAGAAGATTCTTCTGCTTCTGTTGGAGAGGAAAATTTTGAGCAAACATCGCAAACCAGTTATTCTGGAGGAGATGAAGATAACCTTGGACCAGATGCCAAAAGATGGAAGGAAGATAACAAAAACGATGGCTATTCTGTCTCAGGGAGTAGAACGGTTAGAGAGCCTAGAGTTGTAGTTCAAACCACAAGCGAAATTGATATACTTGATGATGGCTTTAGGTGGAGGAAATATGGACAGAAAGTAGTCAAAGGAAACCCAAATGCAAGGAGCTATTACAAATGCACGGCCCCTGGTTGCTCAGTGAGAAAACACGTTGAGCGAGCTGCACATGACATCAAAGCTGTGATCACAACTTATGAAGGGAAACACAACCATGATGTACCTGCTGCACGTGGTAGCGGAAACTATTACATGAACAGAAATTCTCTGAACAGCAGCATACCAGCACCTATAAGACCCTCGGCAGTGAATTGTTATTCTAACTCATCAAGTTTCACAAACTCTCTCTATAATAATACTAGACATCCAGCAACTGGAAATCAAGAATCATGTTCACTGGACAAGTTCAAGAACCCTGGAAGTTTTGGCTATTCAGCTCTTAACAGATCAATGAGTTCACATACCGATCATGCGCAATACACAGATGCTGCACACTCAAAGGCCAAGGATGAAAGGAAGGATGACTCATTCCTTCAGTCATTTCTCTCAAAGGACTACTGA 1623 0.4079 MGDHSNWETSELSHNNHHQNHQVGLDVLKFKSVQPPSLPLSPSPISPSSYLNFSSAFSPSELLNSPLFFPSPNIFASPTTEALVGQSFNWRNGSGEEQQRGKEDEKNYSDFSFQSQIQSSLNMFQVEPLKKQDMWKFNEPTKQSDFSSERTATKSEYPSIQKFSSEMAAGKPEIQSNSVPGSGYFDYTSASLSVREQKRAEDGFNWRKYGQKQVKGSENPRSYYKCTHPNCSVKKKVEKTLEGQITEIVYKGQHNHPKLQSTRRTNSQSINQPSSSCTNSGISDQSVVTLGNPQMDHFSIQEDSSASVGEENFEQTSQTSYSGGDEDNLGPDAKRWKEDNKNDGYSVSGSRTVREPRVVVQTTSEIDILDDGFRWRKYGQKVVKGNPNARSYYKCTAPGCSVRKHVERAAHDIKAVITTYEGKHNHDVPAARGSGNYYMNRNSLNSSIPAPIRPSAVNCYSNSSSFTNSLYNNTRHPATGNQESCSLDKFKNPGSFGYSALNRSMSSHTDHAQYTDAAHSKAKDERKDDSFLQSFLSKDY* 541
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso18g1686 540 MobiDBLite consensus disorder prediction 1 15 - -
Gso18g1686 540 ProSiteProfiles WRKY domain profile. 195 259 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gso18g1686 540 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 17 538 IPR044810 GO:0003700
Gso18g1686 540 MobiDBLite consensus disorder prediction 255 289 - -
Gso18g1686 540 SMART WRKY_cls 369 428 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gso18g1686 540 SMART WRKY_cls 200 258 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gso18g1686 540 MobiDBLite consensus disorder prediction 1 28 - -
Gso18g1686 540 Gene3D WRKY domain 188 258 IPR036576 GO:0003700|GO:0006355|GO:0043565
Gso18g1686 540 MobiDBLite consensus disorder prediction 302 350 - -
Gso18g1686 540 Gene3D WRKY domain 356 422 IPR036576 GO:0003700|GO:0006355|GO:0043565
Gso18g1686 540 SUPERFAMILY WRKY DNA-binding domain 196 258 IPR036576 GO:0003700|GO:0006355|GO:0043565
Gso18g1686 540 ProSiteProfiles WRKY domain profile. 364 429 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gso18g1686 540 PANTHER TRANSCRIPTION FACTOR WRKY FAMILY-RELATED 17 538 - -
Gso18g1686 540 MobiDBLite consensus disorder prediction 302 325 - -
Gso18g1686 540 MobiDBLite consensus disorder prediction 251 289 - -
Gso18g1686 540 Pfam WRKY DNA -binding domain 370 426 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gso18g1686 540 Pfam WRKY DNA -binding domain 201 257 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gso18g1686 540 MobiDBLite consensus disorder prediction 328 344 - -
Gso18g1686 540 SUPERFAMILY WRKY DNA-binding domain 361 429 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso18g1686 Gso-Chr18 48948605 48951669 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso18g1686 189 536 WRKY Transcription Factor Family AT2G38470 53.533 2.06e-107 329
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Gso18g1686 WRKY 1.1e-23 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso18g1686 K13424 - gmx:100792833 1078.16
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g1686 18 48948605 48951669 Gso9g2314 9 47411844 47414893 GST
Gso18g1686 18 48948605 48951669 Gso1g1089 1 44508395 44511909 PCT
Gso1g1089 1 44508395 44511909 Gso18g1686 18 48948605 48951669 PCT