Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso18g1680 ATGGGAGGCTGTTGCAGCCACGATGTTTCGGTTCGAGGGAAGGTGGAGAGCGAGATGGGTGATAGAGAATATGAGTATGAACATGAGAATGATGTGTCTTTTGAACAAGGTGGAGCATTGGTAAGGTTAAGAGGTTCCTCTAGGTTTGTATCAATGTACGCACAGCAGGGTCAGAAAGGTGTGAACCAAGATGCTATGACAGTTTGGGAGGACTATACTGGAGAAAAAGATGTGATCTTTTGTGGTGTGTTCGATGGTCATGGTCCTCTAGGCCACAAGGTTTCACAATTTATTCGTGACAATCTACCCTCAAAACTGTCTGCAGCAATAGAAATTTCACAGCAGAAGACCATCAAATACTATGATGCCAATGATGCAGAAACTGGCTGCTTTGATGATGCCTACGATGACAATAACCACAACATGTCCCTTGCTTCATGGGAGGGATGCTTGCTGAAATCCTTCGATGAGATGGATGAGTACCTTGCTCAGGAAATTAACACTGACAGCTATTGCAGTGGTTGCACCGCTGTGACATTAATTAAACAGGGTGGCCAGTTGATAGTTGGCAATTTGGGTGATTCTCGTGCAGTACTTTGCACAAGGGATAGGGACCAACTCATTCCTGTTCAACTCACTGTTGACTTGAAACCAGATATTCCAAGTGAAACCTCAAGAATTGTTAACTGTGAAGGAAGAGTTTTTGCAGCAGAAGAAGAACCAGATGTGTACAGAATATGGATGCCTGATGATGACTGCCCTGGACTAGCCATGTCAAGAGCCTTTGGGGACTTTTGCCTCAAAGATTATGGCCTCATCTCAGTTCCTGATGTGTTTTACAGAAAAATTACCCCACAAGATGAATTTGTGGTTTTGGCAACTGATGGGGTGTGGGATGTGCTCACTAACAGTGAAGTGATAAACATAGTTGCTTCAGCACCAAGGAGGTCCATTGCAGCCAAGTTGTTAGTGAAGCGTGCTGTTAGAGCCTGGAGATACAAGTATCCTGGTTCCAAGGTCGATGACTGTGCTGCCATATGCTTGTTTCTGGGTGAACAATCTGTTTTGTTAAATTCACAATCCTACATGAGTAGAAAGAGTAGACAGCGCAGCAAGCACTTGAATCGCACTAAGTCCACTAGAAATGAAGACAATGAAACTGTGTATGGCAAGATTGGGGTGGAGCTAGAGCGAGCCAACTCTTTATCAAAACTTCCTCGCCTTGCTAGGGGTATGAGTAAACGGCAATCATCCAAGTACTACACACCAAGTTGA 1275 0.4431 MGGCCSHDVSVRGKVESEMGDREYEYEHENDVSFEQGGALVRLRGSSRFVSMYAQQGQKGVNQDAMTVWEDYTGEKDVIFCGVFDGHGPLGHKVSQFIRDNLPSKLSAAIEISQQKTIKYYDANDAETGCFDDAYDDNNHNMSLASWEGCLLKSFDEMDEYLAQEINTDSYCSGCTAVTLIKQGGQLIVGNLGDSRAVLCTRDRDQLIPVQLTVDLKPDIPSETSRIVNCEGRVFAAEEEPDVYRIWMPDDDCPGLAMSRAFGDFCLKDYGLISVPDVFYRKITPQDEFVVLATDGVWDVLTNSEVINIVASAPRRSIAAKLLVKRAVRAWRYKYPGSKVDDCAAICLFLGEQSVLLNSQSYMSRKSRQRSKHLNRTKSTRNEDNETVYGKIGVELERANSLSKLPRLARGMSKRQSSKYYTPS* 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso18g1680 424 PANTHER ALPHABET, ISOFORM E-RELATED 1 386 - -
Gso18g1680 424 SMART PP2C_4 40 348 IPR001932 -
Gso18g1680 424 Pfam Protein phosphatase 2C 73 327 IPR001932 -
Gso18g1680 424 ProSiteProfiles PPM-type phosphatase domain profile. 49 350 IPR001932 -
Gso18g1680 424 PANTHER PROTEIN PHOSPHATASE 2C 65-RELATED 1 386 - -
Gso18g1680 424 Gene3D - 44 351 IPR036457 -
Gso18g1680 424 MobiDBLite consensus disorder prediction 364 386 - -
Gso18g1680 424 CDD PP2Cc 48 350 IPR001932 -
Gso18g1680 424 SUPERFAMILY PP2C-like 47 351 IPR036457 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso18g1680 Gso-Chr18 48906085 48910053 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso18g1680 1 367 PP2C-type Phosphatase Gene Family AT5G01700 51.181 1.10e-131 382
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso18g1680 - - gmx:100816587 860.136
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g1680 18 48906085 48910053 Gso9g2317 9 47439740 47443792 GST
Gso18g1680 18 48906085 48910053 Gso1g1086 1 44428513 44431226 PCT
Gso1g1086 1 44428513 44431226 Gso18g1680 18 48906085 48910053 PCT