Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso18g1654 ATGCCTATACCTCTTATGGCTTCTCCAACTCTTCTTGTCTTCCTCCTATTCCTCTCTCTCTTACACCAAGTTGCCTCCAAGGCTGTGATCTTTGAAGGATTCGATGAAAACAGTGAACTCAATCTTCAAGGATCTTCCATCATCAAAACCAGCCGTTTGCTTAAACTCACCAACAGATCAACCAATATTGTAGGCCATGCATTCTATGCCACACCCTTCCAAATGCTTAACAAAAACAACACAAACCCTCCACTCCAACCCTATGCTTATTCCTTCAGCACCAATTTTGTTTTTTCAATTGTGTCCCCAATTTCTGGCTCTGGTGGCTTTGGCCTTGCCTTCACCATAGCACCCTCAACACAGTTTCCTGGGGCTGAGGCTGGCCATTATCTTGGTCTTGTCAACTCCGCCAATGATGGGAATGACTCAAACCACATTTTTGCAGTTGAATTTGACACAGTAAATGGTTACAAAGATGACTCAGACACTGAAGGAAACCATGTTGGGGTCAACATCAATGGCATGGACTCAATCATTACTGAACCAGCTGCATACATTGAAGAGGGCACTGATAATGTAAAGGAAGATTTCAGAATGGCTAAGGTTGATGCTGTCCAAGTTTGGATAGAATATGATGGTGAAAAGAAAACTCTGAATGTAACAATAGCTCCTTTGCCATTACCAAGGCCAAGCAAACCAATTATAATGAATCATAACATTGATCTCTACAATGTTATGGAAGAAAGCATGTATGTTGGTTTCTCAGCATCAACAGGCCAAGAAACAAGCTCTCACTATCTTCTAGGATGGAGTTTTGTAGTGAATGGTGTTGCCCCTCTACTGAACATTTCCAACCTTCCAAAGCCACCACCAAAGGAGAAAGAACCAACCTCATTTCCTTGGGTCAATGTTGCAATTGGCATCTTGTCTGGTTTGACTTTTTGCCTTTTGTGTATTCTGTTTTGCCTAACATGTTATAGGAGATACATGGATTTTGAGGTTCTTGAGGACTGGGAGATGGATTGTCCTCACAGGTTTAGGTACAAAGATCTTCACATAGCCACAAAGGGGTTCATAGAGAGCCAGCTCATTGGAGTTGGAGGCTTTGGTGCTGTGTACAAAGGTGTGTTGCCTTCCACAGGAGCTGAGGTTGCTGTCAAGAGGATTGTGAGAAGCCCTTTTCATGGAATGAGGGAATTTGCAGCTGAGATTGAAAGCTTGGGAAAGTTAAGGCACAAGAATTTGGTGAACCTTCAAGGTTGGTGCAAGAAAAAGAATGATCTACTCTTAGTCTATGATTTCATTCCAAACGGAAGTCTTGATTATGTCCTATATAAACCCAACAACAACAATAACTTTGTTTTGAATTGGGGGCAAAGATTCAACATTCTCAAAGACATCAGTGCTGGACTATTGTACCTGCATGAAGAGTGGGAGCAAGTGGTGATCCATAGAGATGTGAAAACTAGCAACATTTTGATTGATGCACACTTGAATGCACGTTTAGGTGACTTTGGACTTGCAAGGCTCTATAACCATGGTCAAGTGTCACACACAACAAGTGTGGTTGGGACTATTGGTTACATTGCACCAGAGTTAACTCGCACAGGAAAGGCTTGTGCAAACACAGATGTGTATTCATTTGGGGTTGTGCTCCTTGAAGTGGCCACAGGTAAGAGGCCTCTTGATTCGGATCAGTTTTTCTTGGTGGAGTGGGTTATTGAGAATTACCATTTGGGTCAAATTCTTGAGGTGGTTGATCCTAAGCTTGATTCACTTTATGATGAGGAAGAAGTTGAGTTGGTTCTGAAATTGGGTCTACTTTGCACTCAACATAGAGCAGATTATAGACCTTCCATGAAACAAGTCACAAGGTACTTGAACTTTGATGACCCTCTTCCTGATATTGCTGATTGGGGACATGATGTTTCTGGCAGCAGTAGATTGAGTGAAGGTTTCTTAGAAGTCACGTCTTCTATGGGAACTGTTGAAACATTAGGGTATTTGTCTTCCATTAGCATGAGTACTAAGTCCATAGATGCTGGTAGATAG 2052 0.4206 MPIPLMASPTLLVFLLFLSLLHQVASKAVIFEGFDENSELNLQGSSIIKTSRLLKLTNRSTNIVGHAFYATPFQMLNKNNTNPPLQPYAYSFSTNFVFSIVSPISGSGGFGLAFTIAPSTQFPGAEAGHYLGLVNSANDGNDSNHIFAVEFDTVNGYKDDSDTEGNHVGVNINGMDSIITEPAAYIEEGTDNVKEDFRMAKVDAVQVWIEYDGEKKTLNVTIAPLPLPRPSKPIIMNHNIDLYNVMEESMYVGFSASTGQETSSHYLLGWSFVVNGVAPLLNISNLPKPPPKEKEPTSFPWVNVAIGILSGLTFCLLCILFCLTCYRRYMDFEVLEDWEMDCPHRFRYKDLHIATKGFIESQLIGVGGFGAVYKGVLPSTGAEVAVKRIVRSPFHGMREFAAEIESLGKLRHKNLVNLQGWCKKKNDLLLVYDFIPNGSLDYVLYKPNNNNNFVLNWGQRFNILKDISAGLLYLHEEWEQVVIHRDVKTSNILIDAHLNARLGDFGLARLYNHGQVSHTTSVVGTIGYIAPELTRTGKACANTDVYSFGVVLLEVATGKRPLDSDQFFLVEWVIENYHLGQILEVVDPKLDSLYDEEEVELVLKLGLLCTQHRADYRPSMKQVTRYLNFDDPLPDIADWGHDVSGSSRLSEGFLEVTSSMGTVETLGYLSSISMSTKSIDAGR* 684
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso18g1654 683 Pfam Protein kinase domain 360 623 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso18g1654 683 Gene3D Transferase(Phosphotransferase) domain 1 435 631 - -
Gso18g1654 683 PANTHER - 11 673 - -
Gso18g1654 683 SMART serkin_6 358 627 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso18g1654 683 CDD STKc_IRAK 364 628 - -
Gso18g1654 683 CDD lectin_legume_LecRK_Arcelin_ConA 30 276 IPR001220 GO:0030246
Gso18g1654 683 ProSitePatterns Serine/Threonine protein kinases active-site signature. 482 494 IPR008271 GO:0004672|GO:0006468
Gso18g1654 683 Gene3D Phosphorylase Kinase; domain 1 343 434 - -
Gso18g1654 683 Pfam Legume lectin domain 30 287 IPR001220 GO:0030246
Gso18g1654 683 Gene3D - 29 276 - -
Gso18g1654 683 SUPERFAMILY Concanavalin A-like lectins/glucanases 30 292 IPR013320 -
Gso18g1654 683 SUPERFAMILY Protein kinase-like (PK-like) 341 631 IPR011009 -
Gso18g1654 683 PANTHER L-TYPE LECTIN-DOMAIN CONTAINING RECEPTOR KINASE VI.1-RELATED 11 673 - -
Gso18g1654 683 ProSiteProfiles Protein kinase domain profile. 358 629 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso18g1654 683 ProSitePatterns Protein kinases ATP-binding region signature. 364 387 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso18g1654 Gso-Chr18 48480280 48482478 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso18g1654 30 652 Receptor kinase-like Gene Family AT5G01560 49.763 0.0 622
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Gso18g1654 Pkinase 5.8e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso18g1654 - - gmx:100802724 1343.56
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g1654 18 48480280 48482478 Gso3g0427 3 7194589 7196833 PCT
Gso3g0556 3 14393315 14395731 Gso18g1654 18 48480280 48482478 PCT
Gso3g0427 3 7194589 7196833 Gso18g1654 18 48480280 48482478 PCT