Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso18g1652 ATGGCCACACCCTTGGCCTACCAAGAGCACCTTCCGGCGGCACCCGGTTGGCTGAACAAAGGTGACAACGCATGGCAGTTAACAGCAGCCACCCTCGTTGGTCTTCAAAGCATGCCGGGTCTCGTGATCCTCTACGCAAGCATAGTGAAGAAGAAATGGGCAGTGAATTCAGCTTTCATGGCTCTCTATGCCTTTGCAGCAGTTCTAATATGTTGGGTGCTTGTGTGTTACCGCATGGCCTTTGGAGAAGAACTTTTACCCTTCTGGGGTAAGGGTGCTCCAGCACTAGGCCAGAAGTTCCTCACAAAACGAGCCGTAGTCAATGAAACCATCCACCACTTTCATAATGGCACTGTTGAATCCCCTCCAGAAGAACCCTTTTACCCTATGGCCTCACTTGTGTATTTCCAATTCACTTTTGCTGCTATTACCCTTATTTTGTTGGCTGGCTCTGTCCTCGGCCGAATGAACATCAAGGCTTGGATGGCTTTTGTGCCTCTTTGGTTGATCTTTTCCTACACTGTTGGGGCTTTTAGTCTTTGGGGTGGTGGCTTTCTCTACCAATGGGGGGTTATTGACTATTCTGGCGGCTATGTCATCCACCTTTCTTCTGGAATCGCTGGTTTAACTGCTGCTTACTGGGTTGGACCAAGGTTGAAGAGTGACAGGGAGAGGTTTCCACCAAACAACGTGCTACTTATGCTTGCTGGTGCTGGGTTGTTGTGGATGGGGTGGTCAGGGTTCAACGGTGGAGCACCATATGCTGCAAACATTGCATCTTCAATTGCGGTGTTGAACACAAACATTTGTGCAGCCACTAGCCTCCTTGTGTGGACAACTTTGGATGTCATTTTCTTTGGGAAACCTTCGGTGATTGGAGCTGTGCAGGGCATGATGACTGGACTTGTATGCATCACCCCAGGAGCAGGGCTTGTGCAATCGTGGGCTGCTATACTGATGGGAATATTATCTGGGAGCATTCCATGGGTGACCATGATGATTTTGCATAAAAAGTCAACCTTGCTACAAAAGGTGGATGACACCCTTGGTGTGTTTCACACACATGCTGTGGCTGGCCTTTTGGGTGGTCTCCTCACAGGTCTATTAGCAGAACCAGCCCTTTGTAGACTACTATTGCCGGTTACCAACTCAAGGGGTGCATTCTATGGTGGTGGTGGTGGTATGCAGTTCTTCAAGCAATTGGTGGCGGCCATGTTTGTCATTGGATGGAACTTGGTGTCCACCACCATCATTCTCCTTGTCATAAAATTGTTCATACCCTTGAGGATGCCGGATGAGCAGCTGGAAATCGGCGACGACGCCGTCCACGGTGAGGAAGCTTATGCCCTCTGGGGTGATGGAGAAAAATATGACCCAACTAGGCATGGTTCCTTGCAAAGTGGCAACACTTTTGTGTCACCTTATGTTAATGGTGCAAGAGGGGTGACCATAAACTTATGA 1461 0.4908 MATPLAYQEHLPAAPGWLNKGDNAWQLTAATLVGLQSMPGLVILYASIVKKKWAVNSAFMALYAFAAVLICWVLVCYRMAFGEELLPFWGKGAPALGQKFLTKRAVVNETIHHFHNGTVESPPEEPFYPMASLVYFQFTFAAITLILLAGSVLGRMNIKAWMAFVPLWLIFSYTVGAFSLWGGGFLYQWGVIDYSGGYVIHLSSGIAGLTAAYWVGPRLKSDRERFPPNNVLLMLAGAGLLWMGWSGFNGGAPYAANIASSIAVLNTNICAATSLLVWTTLDVIFFGKPSVIGAVQGMMTGLVCITPGAGLVQSWAAILMGILSGSIPWVTMMILHKKSTLLQKVDDTLGVFHTHAVAGLLGGLLTGLLAEPALCRLLLPVTNSRGAFYGGGGGMQFFKQLVAAMFVIGWNLVSTTIILLVIKLFIPLRMPDEQLEIGDDAVHGEEAYALWGDGEKYDPTRHGSLQSGNTFVSPYVNGARGVTINL* 487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso18g1652 486 PANTHER AMMONIUM TRANSPORTER 1 483 - -
Gso18g1652 486 SUPERFAMILY Ammonium transporter 17 430 - -
Gso18g1652 486 TIGRFAM amt: ammonium transporter 22 448 IPR001905 GO:0008519|GO:0016020|GO:0072488
Gso18g1652 486 PANTHER AMMONIUM TRANSPORTER MEP2 1 483 IPR001905 GO:0008519|GO:0016020|GO:0072488
Gso18g1652 486 Gene3D Ammonium transporter AmtB like domains 4 451 IPR029020 -
Gso18g1652 486 Pfam Ammonium Transporter Family 24 448 IPR024041 GO:0008519|GO:0016020|GO:0072488
Gso18g1652 486 ProSitePatterns Ammonium transporters signature. 193 218 IPR018047 GO:0008519|GO:0016020|GO:0072488
Gso18g1652 486 PRINTS Rhesus blood group protein signature 137 153 IPR002229 GO:0005887
Gso18g1652 486 PRINTS Rhesus blood group protein signature 232 250 IPR002229 GO:0005887
Gso18g1652 486 PRINTS Rhesus blood group protein signature 263 285 IPR002229 GO:0005887
Gso18g1652 486 PRINTS Rhesus blood group protein signature 356 372 IPR002229 GO:0005887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso18g1652 Gso-Chr18 48417660 48422455 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso18g1652 130 486 Inorganic Solute Cotransporters AT2G38290 77.716 0.0 548
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso18g1652 K03320 - gmx:100783281 946.806
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g1652 18 48417660 48422455 Gso9g2323 9 47538956 47541843 GST