Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso18g1647 ATGAGGACCCGTTTATCCTCGACTTGGGTCATCTTCGTGGCCTCGTTCTGTTTCCTCGCAAGCTTCGAATTATTGCAAGCCAAAACCATCGACCCCTACAAGGTTCTTGGGGTTGATAAAAATGCAAGTCAGCGGGAAATTCAGAAGGCTTTTCACAAGCTATCTCTTCAGTATCACCCTGACAAGAACAAAGCCAAGGGTGCACAAGAGAAGTTTTCTCAGATCAATAATGCATATGAACTTTTATCCGATGAAGAGAAGAGAAAGAATTATGATTTGTATGGAGATGAGAAAGGAAACCCTGGATTTCAAGGTGGCCATCCTGGAGGTCAGGATGGATATACTTATTTTACAGGGGGTGGTCCTGGACAAAGCCATTTTAACTTCAAACCAGGGGGGGGCTGGCAGGGTATGGGTGGTCAGGGAGGATCTAAGTCATTCTCCTTTTCTTTTGGCAGCTCGGGCAATTCCAATCCTTTTGGATTTGGCTTGGATGATCTTTTTGGCAGTTTTTTCGGTGGTGGAGGTGGTGGGAGTCAGTTTGGTGGTTTTGGCAGTTCAGCCAAGTCTGGGTCCAAGAGTTCTGCCAAAAGTCTTAGAGCTGTAAATTCACAGATTTACAAGAAAGAAATAGAAAATGCAGGAATGACTTGGCTTTTGTTATCTTATATACCCTCATCGAAGGGGATCCAATACTTTGAATCCACTATAGAGGAGGTTGCCAGTTCATTGCAGGGAGCTTTGAAGGTTGGAAGCATAAACTGTGAAAAGGAAGTCTCATTCTGTAAGGAGCTTGGCATATATCCACGGAGAGCTCCTAGGCTTTTTGTTTTTTCTTATAAGGAGAATGAAAAAGGTTCTTTGGTGGAGTACAGTGGAGACTTGGATGCTAAGAATTTGAAGGCTTTCTGTCAAGAACACTTGCCAAGGTTTTCAAAACGAACCGACTTGAATCATCTTGATCAATTCAGCACTACTGGAAAGTTGCCTAGGGTGCTGCTTCTTTCCACCAAGAAGGACACTCCTGTAATTTGGCGTGTCCTTAGTGGCTTGTATCACAAACGCATTACTTTCAGTGATGCAGAGGTTCATGATGTTGCTGATCCTAGAGTGAAAACACTAGAAGTTGATGCACTTCCAGCTATAGTAGGTTGGCTACCAAATGGAGAAAAGCGTATCCTGAAAACTGGGATATCTGTGAAAGATTTAAAATCTGCAGTTCTTGATCTTAGTAACATACTTGATAGTTTTGAAAAAGTAAGTAAAAAGGAATCATCAGGTCAGGCCAAGAAGGCACAAACTGACTCAGACGAGGGACGCATACCATTACTTTCTAAATCAAACTTTGAGGCTCTATGTGGTGAGAAAACTCCAGTCTGCATAATTGGTGCCTTCAGATCTTCTAAAGCTAGAGAAAAGCTAGAATCAATCCTCTCTTTGGTCTCTCAAAAATCTTTGTCAAGACGACCAAGTCAGGGATCCAGCAGCTCTAGGGACTCCATTTTCTATGTTCTCTTAGATGCTGCGAAGCAAAAATCATTTCTAAAGGCATTTGACAAAACAGATTATAAATCATCAAATAATTTGTTGATTGCCTACAAACCTCGGAGAGGGAAGTATAGTGTATTTATGGGCGAAATGACAATAGAGGAGGCAGAGAAGTTCATTAGCTCCGTTCTCAGTGGAGATGTACCCTTCAGAGAAACAAGTAGGAAGCCTGTACTAGAGTATTAG 1734 0.4216 MRTRLSSTWVIFVASFCFLASFELLQAKTIDPYKVLGVDKNASQREIQKAFHKLSLQYHPDKNKAKGAQEKFSQINNAYELLSDEEKRKNYDLYGDEKGNPGFQGGHPGGQDGYTYFTGGGPGQSHFNFKPGGGWQGMGGQGGSKSFSFSFGSSGNSNPFGFGLDDLFGSFFGGGGGGSQFGGFGSSAKSGSKSSAKSLRAVNSQIYKKEIENAGMTWLLLSYIPSSKGIQYFESTIEEVASSLQGALKVGSINCEKEVSFCKELGIYPRRAPRLFVFSYKENEKGSLVEYSGDLDAKNLKAFCQEHLPRFSKRTDLNHLDQFSTTGKLPRVLLLSTKKDTPVIWRVLSGLYHKRITFSDAEVHDVADPRVKTLEVDALPAIVGWLPNGEKRILKTGISVKDLKSAVLDLSNILDSFEKVSKKESSGQAKKAQTDSDEGRIPLLSKSNFEALCGEKTPVCIIGAFRSSKAREKLESILSLVSQKSLSRRPSQGSSSSRDSIFYVLLDAAKQKSFLKAFDKTDYKSSNNLLIAYKPRRGKYSVFMGEMTIEEAEKFISSVLSGDVPFRETSRKPVLEY* 578
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso18g1647 577 Coils Coil 65 85 - -
Gso18g1647 577 SMART dnaj_3 30 87 IPR001623 -
Gso18g1647 577 CDD PDI_a_family 233 303 - -
Gso18g1647 577 CDD DnaJ 31 84 IPR001623 -
Gso18g1647 577 Pfam Thioredoxin-like domain 208 306 - -
Gso18g1647 577 Gene3D Glutaredoxin 195 315 - -
Gso18g1647 577 Pfam DnaJ domain 31 92 IPR001623 -
Gso18g1647 577 PANTHER DNAJ PROTEIN ERDJ3A 7 576 - -
Gso18g1647 577 ProSiteProfiles dnaJ domain profile. 31 95 IPR001623 -
Gso18g1647 577 PANTHER DNAJ PROTEIN ERDJ3A 7 576 - -
Gso18g1647 577 SUPERFAMILY Chaperone J-domain 26 129 IPR036869 -
Gso18g1647 577 SUPERFAMILY Thioredoxin-like 202 308 IPR036249 -
Gso18g1647 577 ProSitePatterns Nt-dnaJ domain signature. 72 91 IPR018253 -
Gso18g1647 577 Gene3D DnaJ domain 28 182 IPR036869 -
Gso18g1647 577 PRINTS DnaJ domain signature 33 51 IPR001623 -
Gso18g1647 577 PRINTS DnaJ domain signature 51 66 IPR001623 -
Gso18g1647 577 PRINTS DnaJ domain signature 67 87 IPR001623 -
Gso18g1647 577 PRINTS DnaJ domain signature 87 106 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso18g1647 Gso-Chr18 48322511 48326012 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso18g1647 33 94 C2H2 Transcription Factor Family AT1G74250 42.647 8.10e-07 50.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g1647 18 48322511 48326012 Gso7g1299 7 18690683 18694521 GST