Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso18g1626 ATGGGCAACTGCTGTAGATCCCCGGCCGCCGTAGCCCGCGAGGACGTGAAATCGAGCTTCTCCAACGCCGACCACGGAAAGCGCGGCGGCGGAGGCGGCTCCGCCGCCTCCGCCGCGAAGCAGAAGGCGCCGATCACGGTCCTCGCCGGCGTGCCGAAGGAGAACATCGAGGACCGGTACCTGGTGGACCGCGAGCTCGGGCGCGGCGAGTTCGGCGTGACGTACCTCTGCATCGACCGCGACACGCGCGAGCTGCTCGCGTGCAAGAGCATCTCCAAGAGGAAGCTCCGGACCGCCGTCGACGTCGAGGACGTGCGCCGCGAGGTTGCCATCATGCGCCACCTGCCGGACAGCCCGAGCATCGTGTCGCTCCGCGAGGCATGCGAGGACGACAATGCCGTCCACCTCGTCATGGAGCTCTGCGAGGGCGGCGAGCTCTTCGACCGGATCGTCGCCCGCGGGCACTACACCGAGCGCGCCGCCGCGGCAGTCACGCGGACGATCGTCGAGGTCGTGCAGCTCTGCCACAAGCACGGGGTCATCCACCGAGACCTCAAGCCGGAGAACTTCTTGTTCGCGAACAAGAAGGAGAATTCGCCGCTCAAGGCTATTGACTTTGGCCTCTCCATATTCTTCAAGCCAGGTGAGAGGTTCTCAGAAATTGTTGGAAGTCCATATTATATGGCTCCGGAAGTGCTCAAGCGGAATTATGGACCCGAAATAGATATATGGAGTGCAGGAGTAATTCTCTACATCTTATTGTGTGGTGTTCCTCCATTTTGGGCTGAATCTGAGCAAGGAGTTGCACAGGCCATTCTTCGAGGACTTATAGATTTTAAAAGGGAACCATGGCCCAGTATTTCTGAAAGTGCTAAAAGCCTTGTTAGGCAAATGTTAGAACCAGACCCCAAGCTTCGATTAACTGCCAAACAAGTGCTTGAGCATCCCTGGATTCAAAATGCTAAGAAGGCTCCTAATGTTCCACTTGGAGATGTTGTCAAGTCAAGGCTTAAGCAATTTTCAATGATGAACAGATTCAAAAGAAAAGCCCTTAGGGTCATTGCTGATTTCTTATCCAATGAAGAAGTTGAAGACATCAAAGATATGTTCAAGAAGATGGATAATGATAATGATGGCATTGTTTCCATTGAAGAACTAAAAGCTGGATTTCGAAACTTTGGGTCTCAACTGGCTGAGTCTGAAGTTCAGTTGCTTATTGAAGCTGTAGATACTAATGGTAAGGGAACACTAGACTACGGAGAATTTGTTGCTGTTTCCCTTCATTTAAAAAGGATGGCTAATGACGATCATCTTCACAAGGCCTTCTCCTATTTTGACAAAGATGGGAATGGATATATTGAACCAGATGAGCTACGGAATGCTTTGATGGAAGATGGAGCAGAGGACTGTACAGATGTAGCAAATGATATTTTCCTAGAAGTAGACACGGACAAGGATGGACGTATCAGCTATGATGAATTTGTTGCTATGATGAAAACTGGAACGGATTGGAGAAAAGCATCAAGGCATTACTCGCGTGGAAGATTCAACAGCTTGAGCTTAAAGTTGATGAAAGACGGTTCTTTAAACTTAGGAAATGAGTAG 1605 0.5078 MGNCCRSPAAVAREDVKSSFSNADHGKRGGGGGSAASAAKQKAPITVLAGVPKENIEDRYLVDRELGRGEFGVTYLCIDRDTRELLACKSISKRKLRTAVDVEDVRREVAIMRHLPDSPSIVSLREACEDDNAVHLVMELCEGGELFDRIVARGHYTERAAAAVTRTIVEVVQLCHKHGVIHRDLKPENFLFANKKENSPLKAIDFGLSIFFKPGERFSEIVGSPYYMAPEVLKRNYGPEIDIWSAGVILYILLCGVPPFWAESEQGVAQAILRGLIDFKREPWPSISESAKSLVRQMLEPDPKLRLTAKQVLEHPWIQNAKKAPNVPLGDVVKSRLKQFSMMNRFKRKALRVIADFLSNEEVEDIKDMFKKMDNDNDGIVSIEELKAGFRNFGSQLAESEVQLLIEAVDTNGKGTLDYGEFVAVSLHLKRMANDDHLHKAFSYFDKDGNGYIEPDELRNALMEDGAEDCTDVANDIFLEVDTDKDGRISYDEFVAMMKTGTDWRKASRHYSRGRFNSLSLKLMKDGSLNLGNE* 535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso18g1626 534 SMART serkin_6 60 318 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso18g1626 534 Gene3D Transferase(Phosphotransferase) domain 1 146 326 - -
Gso18g1626 534 ProSiteProfiles EF-hand calcium-binding domain profile. 469 504 IPR002048 GO:0005509
Gso18g1626 534 ProSiteProfiles Protein kinase domain profile. 60 318 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso18g1626 534 CDD EFh 437 499 IPR002048 GO:0005509
Gso18g1626 534 ProSitePatterns EF-hand calcium-binding domain. 374 386 IPR018247 -
Gso18g1626 534 Pfam EF-hand domain pair 436 499 IPR002048 GO:0005509
Gso18g1626 534 Pfam EF-hand domain pair 364 424 IPR002048 GO:0005509
Gso18g1626 534 MobiDBLite consensus disorder prediction 16 38 - -
Gso18g1626 534 PANTHER CALCIUM-DEPENDENT PROTEIN KINASE 13 6 515 - -
Gso18g1626 534 ProSiteProfiles EF-hand calcium-binding domain profile. 433 468 IPR002048 GO:0005509
Gso18g1626 534 ProSiteProfiles EF-hand calcium-binding domain profile. 361 396 IPR002048 GO:0005509
Gso18g1626 534 ProSitePatterns EF-hand calcium-binding domain. 482 494 IPR018247 -
Gso18g1626 534 ProSiteProfiles EF-hand calcium-binding domain profile. 397 432 IPR002048 GO:0005509
Gso18g1626 534 SUPERFAMILY EF-hand 347 525 IPR011992 -
Gso18g1626 534 Gene3D - 327 502 - -
Gso18g1626 534 ProSitePatterns Protein kinases ATP-binding region signature. 66 89 IPR017441 GO:0005524
Gso18g1626 534 ProSitePatterns EF-hand calcium-binding domain. 446 458 IPR018247 -
Gso18g1626 534 CDD STKc_CAMK 59 317 - -
Gso18g1626 534 SUPERFAMILY Protein kinase-like (PK-like) 58 325 IPR011009 -
Gso18g1626 534 Gene3D Phosphorylase Kinase; domain 1 61 145 - -
Gso18g1626 534 Pfam Protein kinase domain 62 318 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso18g1626 534 PANTHER SERINE/THREONINE-PROTEIN KINASE 6 515 - -
Gso18g1626 534 SMART efh_1 401 429 IPR002048 GO:0005509
Gso18g1626 534 SMART efh_1 437 465 IPR002048 GO:0005509
Gso18g1626 534 SMART efh_1 365 393 IPR002048 GO:0005509
Gso18g1626 534 SMART efh_1 473 501 IPR002048 GO:0005509
Gso18g1626 534 ProSitePatterns Serine/Threonine protein kinases active-site signature. 180 192 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso18g1626 Gso-Chr18 47927117 47934486 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso18g1626 40 531 EF-hand Containing Proteins AT1G74740 72.764 0.0 755
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Gso18g1626 Pkinase 4.2e-74 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso18g1626 K13412 - gmx:100793170 1045.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g1626 18 47927117 47934486 Gso7g1281 7 18312775 18319985 GST