Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso18g1623 ATGGACATGGCTTCCAGTCCCCGCACCGTTGAAGAGATCTTCAAGGATTACGGCGCCAGAAGAACTGCCGTTATTCGCGCTCTCACTCACGACGTTGATGAATTTTACGGCCTCTGTGATCCAGATAAGGATAACCTGTGCCTCTATGGACATCCAAATGAGGCCTGGGAAGTAACTCTGCCAGCGGAGGAAGTTCCGCCAGAGCTCCCTGAGCCTGCTCTTGGAATCAATTTTGCTAGGGATGGCATGAACCGCAGGGACTGGCTTTCTCTTGTTGCTGTGCACAGTGATTCGTGGTTGGTTTCTGTGGCCTTTTACCTCGGGGCTCGTCTTAACCGCAATGAAAGGAAACGTTTATTTAGCTTGATCAATGATCTTCCATCTGTTTTTGAAGTTGTGACTGACAGGAAACCAGTTAAGGACAAGCCAACTGCAGATAGTGGAAGCAAGTCTAGGGGAAGTGCCAAGAGATCTAGTGATGAGCAAGTTAAAAGCAACCCAAAGTTTGTAGATGAGGGTTATGAGGAGGATGAAGATGAGCATAATGAAACACTTTGTGGAAGCTGTGGCGGAAATTACAATGCTGATGAGTTTTGGATTTGCTGTGACATATGTGAGAGGTGGTTCCATGGGAAGTGTGTTAAGATTACCCCTGCAAAGGCTGAGAGCATAAAGCAATATAAATGTCCATCATGCAGCCTGAGGCGGGGCAGGCCATAG 720 0.4764 MDMASSPRTVEEIFKDYGARRTAVIRALTHDVDEFYGLCDPDKDNLCLYGHPNEAWEVTLPAEEVPPELPEPALGINFARDGMNRRDWLSLVAVHSDSWLVSVAFYLGARLNRNERKRLFSLINDLPSVFEVVTDRKPVKDKPTADSGSKSRGSAKRSSDEQVKSNPKFVDEGYEEDEDEHNETLCGSCGGNYNADEFWICCDICERWFHGKCVKITPAKAESIKQYKCPSCSLRRGRP* 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso18g1623 239 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 183 233 IPR013083 -
Gso18g1623 239 PANTHER CPG BINDING PROTEIN 3 238 IPR045104 GO:0006355|GO:0042393
Gso18g1623 239 SMART PHD_3 185 233 IPR001965 -
Gso18g1623 239 MobiDBLite consensus disorder prediction 137 176 - -
Gso18g1623 239 MobiDBLite consensus disorder prediction 137 171 - -
Gso18g1623 239 CDD PHD_AL_plant 185 235 IPR044104 -
Gso18g1623 239 ProSiteProfiles Zinc finger PHD-type profile. 183 235 IPR019787 -
Gso18g1623 239 PANTHER PHD FINGER PROTEIN ALFIN-LIKE 1-LIKE 3 238 - -
Gso18g1623 239 Pfam PHD-finger 186 233 IPR019787 -
Gso18g1623 239 ProSitePatterns Zinc finger PHD-type signature. 186 232 IPR019786 -
Gso18g1623 239 SUPERFAMILY FYVE/PHD zinc finger 174 237 IPR011011 -
Gso18g1623 239 Pfam Alfin 9 134 IPR021998 GO:0006355|GO:0042393
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso18g1623 Gso-Chr18 47855752 47860462 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso18g1623 4 238 Alfin-like Transcription Factor Family AT5G05610 75.000 1.56e-119 338
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Gso18g1623 Alfin 3.9e-66 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso18g1623 - - gmx:100819621 485.337
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g1623 18 47855752 47860462 Gso7g1276 7 18181586 18185483 GST
Gso18g1623 18 47855752 47860462 Gso3g0466 3 8314139 8317605 PCT
Gso3g0466 3 8314139 8317605 Gso18g1623 18 47855752 47860462 PCT
Gso1g0952 1 38596968 38598000 Gso18g1623 18 47855752 47860462 PCT
Gso3g0689 3 21060815 21062045 Gso18g1623 18 47855752 47860462 PCT