Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso18g1622 ATGGGCGTGGACTACTACAAGATTCTTCAGGTAGATAGAAGTGCCAAAGATGAGGATCTCAAGAAAGCATATCGAAGGCTAGCCATGAAGTGGCACCCTGATAAGAACCCTAACAACAAGAAAGAGGCTGAAGCTAAATTCAAGCAAATCTCCGAAGCTTATGATGTTTTGAGTGATCCACAGAAGCGAGGAATTTATGATCAGTATGGTGAGGAGGGGTTGAATGGGGTGCCGCCAGGCGCAGGTGGTTTTCCTGGTGGTGGCGACGGTGGGCCGACGTCATTCCGGTTCAATCCCAGAAGTGCAGATGATATATTTTCCGAGTTTTTCGGGTTTTCGAGACCCTTTGGTGGAATGGGGGACATGGGTGGCCGAGCTGGTGGCTCTGGATTTTCCAGGGGTGGCCCGTTTGGTGAAGATATCTTTGCTCAATTTAGGAGTGCAGCTGGGGAGAGCTGTGGCCATATGCAAAGGAAAGGTGCAGCCATTGAGAGACAATTGCCTTGTAGCTTGGAGGATTTGTATAAAGGGACTACCAAGAAAATGAAGATTTCAAGGGATGTTAGTGATGCCAGTGGGAGACCCTCCACAGTAGAGGAAATACTTACAATTGAGATCAAGCCAGGTTGGAAGAAAGGAACAAAAATAACTTTTCCTGAAAAGGGAAATGAGCAGAGAGGAGTTATCCCTTCAGACCTTGTCTTTATTATTGATGAGAAACCTCATAGTCTCTTTAAAAGGGATGGCAATGATCTTGTTGTCACCCAGAAGATATCGCTTGTAGAAGCCTTGACAGGTTACACAGTGCAGCTGACAACCCTTGATGGGCGGAATCTTACATTCCCCATTAACTCCACTATTAGTCCAACATATGAAGAAGTTGTCAAAGGAGAGGGTATGCCCATTCCAAAAGAACCTTCCAAGAAGGGAAACTTAAGAATCAAGTTCAATATCAAGTTTCCCTCCAGGCTTACATCCGAACAGAAAAGTGGCATCAAGCGATTATTGACATCTCCTTAA 1020 0.4539 MGVDYYKILQVDRSAKDEDLKKAYRRLAMKWHPDKNPNNKKEAEAKFKQISEAYDVLSDPQKRGIYDQYGEEGLNGVPPGAGGFPGGGDGGPTSFRFNPRSADDIFSEFFGFSRPFGGMGDMGGRAGGSGFSRGGPFGEDIFAQFRSAAGESCGHMQRKGAAIERQLPCSLEDLYKGTTKKMKISRDVSDASGRPSTVEEILTIEIKPGWKKGTKITFPEKGNEQRGVIPSDLVFIIDEKPHSLFKRDGNDLVVTQKISLVEALTGYTVQLTTLDGRNLTFPINSTISPTYEEVVKGEGMPIPKEPSKKGNLRIKFNIKFPSRLTSEQKSGIKRLLTSP* 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso18g1622 339 SMART dnaj_3 3 62 IPR001623 -
Gso18g1622 339 Gene3D DnaJ domain 3 121 IPR036869 -
Gso18g1622 339 PANTHER DNAJ HOMOLOG SUBFAMILY C MEMBER 1 338 - -
Gso18g1622 339 Gene3D - 161 240 - -
Gso18g1622 339 CDD DnaJ 4 59 IPR001623 -
Gso18g1622 339 Pfam DnaJ C terminal domain 163 321 IPR002939 -
Gso18g1622 339 PANTHER BNAANNG28460D PROTEIN 1 338 - -
Gso18g1622 339 SUPERFAMILY Chaperone J-domain 3 119 IPR036869 -
Gso18g1622 339 ProSiteProfiles dnaJ domain profile. 4 70 IPR001623 -
Gso18g1622 339 ProSitePatterns Nt-dnaJ domain signature. 47 66 IPR018253 -
Gso18g1622 339 SUPERFAMILY HSP40/DnaJ peptide-binding domain 164 242 IPR008971 GO:0006457|GO:0051082
Gso18g1622 339 PRINTS DnaJ domain signature 6 24 IPR001623 -
Gso18g1622 339 PRINTS DnaJ domain signature 24 39 IPR001623 -
Gso18g1622 339 PRINTS DnaJ domain signature 42 62 IPR001623 -
Gso18g1622 339 PRINTS DnaJ domain signature 62 81 IPR001623 -
Gso18g1622 339 SUPERFAMILY HSP40/DnaJ peptide-binding domain 245 330 IPR008971 GO:0006457|GO:0051082
Gso18g1622 339 Gene3D - 242 322 - -
Gso18g1622 339 CDD DnaJ_C 163 324 - -
Gso18g1622 339 Pfam DnaJ domain 4 67 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso18g1622 Gso-Chr18 47844308 47848766 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso18g1622 5 69 C2H2 Transcription Factor Family AT1G74250 36.232 3.60e-09 56.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso18g1622 K09510 - gmx:100818358 613.609
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g1622 18 47844308 47848766 Gso7g1275 7 18172003 18176360 GST
Gso18g1622 18 47844308 47848766 Gso3g0467 3 8360521 8365462 PCT
Gso3g0467 3 8360521 8365462 Gso18g1622 18 47844308 47848766 PCT