Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso18g1614 ATGGGTTCTCACCAGCAAGAACCATGGCTATTGGAGAATGGGAAACCGAGGGTGTTGACCAAGGAGAATAGGCATGGCCGTTCTGCACACAGCATGTCCTCCACGTCTTTGCGCAAGAAGTCTAGCCGAACTCTTGTCTCCAAGCTTCCATGTGCCACACTCAGAAGCATCCTTTTAAATTTGCAAGAGGTTATTCTTGGTACCAAGCTTTCCATTCTCATCCCTGCCATTCCAGCTGCCATCATTGCCGAGTGCTATGGCTTTGGAAGACCTTGGATTTTTATATTGAGCTTACTTGGACTTACACCACTTGCTGAACGTGTGAGCTTCATCACAGAACAAGTTGCCTTTTACACTGGTCCCACAGTCGGAGGACTTCTGAATGCTACATGTGGGAATGTTACTGAGCTCATAATAGCAATATTTGCCCTTAGCAGTAACAAAATTGCTGTGGTCAAGTATTCTCTGTTGGGTTCTATTCTTTCAAACCTTCTTCTGGTTCTTGGGACCTCTCTATTATGTGGTGGCATTGCAAACCTTAAAGTGGAACAAAAATATGACAGAAGACAAGCAGATGTGAACTCACTTATGCTGTTGTTGGGATTGTTGTGCTACTTGCTTCCAATGCTGTTCAAATACAGTGGTGCCTCAGCTGCTCTCACTGTAGACCCTTCACTCCACTTGTCAAGAGCTTCTAGCATTGTGATGTTGATTGCATATGTAGTCTACATTGTCTTTCAACTGTGGACACACAGGCAGTTATTTGAAGCCGAAGATGAGGGTGAGGATGGTGAGGACGGTGAAGAAGAACAAGCTGTGATTGGATTATGGAGTGGCATTGCTTGGTTGGTAGGGATGACTGTGTTCATTGCTGTGTTGTCTGAATATGTGGTGGATACAATTGAGGATGCATCAGATTCGTGGGGTTTGTCTGTGAGCTTTCTCAGCATAATCTTGCTACCAATAGTTGGAAATGCAGCTGAACATGCAGGAGCAATCATATTTGCTTTCAAGAACAAGCTGGACATTTCATTGGGTGTTGCATTGGGTTCAGCAACTCAGATTGCCATGTTCGTGGTCCCATTATGTGTAATCGTTGCTTGGATAATGGGTATCGATATGGACCTGAACTTCAACCTCCTAGAGACAGGTTCCCTTGCGTTGGCAATAATAGTCACAGGCTTCACTTTACAGGATGGGACTTCTCACTACATGAAAGGCCTTGTTCTCCTGCTGTGCTACATTGTTATTGGGGCATGCTTCTTCGTACAAAGAACACCCTTTAATAATCAAGCTGATGTTACTAACATCACACTTAAACCAGCCACTAATGCAGTTTTAAGCGCTTAA 1350 0.4422 MGSHQQEPWLLENGKPRVLTKENRHGRSAHSMSSTSLRKKSSRTLVSKLPCATLRSILLNLQEVILGTKLSILIPAIPAAIIAECYGFGRPWIFILSLLGLTPLAERVSFITEQVAFYTGPTVGGLLNATCGNVTELIIAIFALSSNKIAVVKYSLLGSILSNLLLVLGTSLLCGGIANLKVEQKYDRRQADVNSLMLLLGLLCYLLPMLFKYSGASAALTVDPSLHLSRASSIVMLIAYVVYIVFQLWTHRQLFEAEDEGEDGEDGEEEQAVIGLWSGIAWLVGMTVFIAVLSEYVVDTIEDASDSWGLSVSFLSIILLPIVGNAAEHAGAIIFAFKNKLDISLGVALGSATQIAMFVVPLCVIVAWIMGIDMDLNFNLLETGSLALAIIVTGFTLQDGTSHYMKGLVLLLCYIVIGACFFVQRTPFNNQADVTNITLKPATNAVLSA* 450
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso18g1614 449 Gene3D - 121 272 IPR044880 -
Gso18g1614 449 Gene3D - 273 421 IPR044880 -
Gso18g1614 449 TIGRFAM cax: calcium/proton exchanger 74 422 IPR004798 GO:0006816|GO:0015369
Gso18g1614 449 PANTHER VACUOLAR CATION/PROTON EXCHANGER 3 2 433 - -
Gso18g1614 449 MobiDBLite consensus disorder prediction 22 41 - -
Gso18g1614 449 PANTHER VACUOLAR CALCIUM ION TRANSPORTER 2 433 IPR004713 GO:0006812|GO:0008324|GO:0016021
Gso18g1614 449 Pfam Sodium/calcium exchanger protein 280 417 IPR004837 GO:0016021|GO:0055085
Gso18g1614 449 Pfam Sodium/calcium exchanger protein 92 249 IPR004837 GO:0016021|GO:0055085
Gso18g1614 449 TIGRFAM caca2: calcium/proton exchanger 56 422 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso18g1614 Gso-Chr18 47712874 47717045 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso18g1614 7 427 Antiporters AT2G38170 70.930 0.0 582
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso18g1614 K07300 - gmx:100816231 806.208
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g1614 18 47712874 47717045 Gso7g1267 7 18008394 18012677 GST
Gso18g1614 18 47712874 47717045 Gso3g0475 3 8528575 8542016 PCT
Gso3g0475 3 8528575 8542016 Gso18g1614 18 47712874 47717045 PCT