Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso18g1613 ATGGCATGTCCAGCAATGGCAAATGGGAACGACTCATTGAACTTGAAGCCAAGTGAGACCAAGGGAAAGACCATCACTTGCAAAGCCGCGGTGGCATATGGTCCTGGAGAGCCCTTTGTGGTGGAAAATATTCTTGTTCATCCTCCTCAGAAAATGGAGGTTCGAATCAAGATCCTCTACACTTCAATTTGTCACACCGATCTTAGCGCGTGGCGAGGCGTGAGCGAGGCTCAGCGTGCTTATCCTCGGATTTTGGGCCATGAAGCATCTGGGATTGTGGAGAGTGTGGGGGAAGGAGTGAGTGAAGTGAAGGAAGGGGACATAGTGGTGCCAATATTCAATGGGGAGTGTGGAGAGTGTACCTTGTGCAAGTGTGAGAAGACCAACAAGTGTGAGATATATGGGGTGAATCCCATGAAGAAGGTGATGGAAGGAGATGGCACAAGCAGATTCTCCACAGTTCATGGGAAACCCATTTTCCATTTCTTGAACACTTCGACTTTCTCGGAGTACACGGTGGTGGATTCGGCCTGTGTGGTGAAGTTTGTGAGCACTGACCACAGTCTCAGCATCAAGAACCTCACCTTGCTCAGTTGTGGTGTCTCCACAGGGGTTGGAGCTGCTTGGAATACAGCTAATGTGCATTCGGGTTCAACTGTAGCTGTTTTCGGCTTAGGAGCTGTTGGGCTCGCTGTTGCTGAAGGGGCACGAGCTAGAGGTGCATCCAAAATAATAGGTGTAGACATCAACCCTGACAAATTCATCAAAGCTATGGGAGTGACAAACTTCATAAACCCCAAGGATGAAGAGAAGCCAGTATACGAGAGAATTAGAGAAATGACTGATGGAGGTGTACACTACAGTTTTGAATGTACTGGAAACGTGGACGTTCTTAGGGATGCCTTCTTGTCTGCTCATGAGGGTTGGGGATTGACTGTAGTATTGGGAATTCATGCATCACCAACTTTGCTTCCCATCCACCCAATGGAGCTCTTCGATGGTCGCAACATTGTAGGATCTGTATTTGGAGGTTTCAAAGGGAGAAGTCACTTGCCTCATTTTGCGAAACAATGTGGACAAGGAGTGGTGAAGCTGGATAATTTCATCACTCACGAGCTACCTTTAGAGGAGATAGACAAAGCCTTTGATCTTTTGATCACTGGGAAGTCACTGAGATGTCTTCTGCACTTCTAA 1194 0.4749 MACPAMANGNDSLNLKPSETKGKTITCKAAVAYGPGEPFVVENILVHPPQKMEVRIKILYTSICHTDLSAWRGVSEAQRAYPRILGHEASGIVESVGEGVSEVKEGDIVVPIFNGECGECTLCKCEKTNKCEIYGVNPMKKVMEGDGTSRFSTVHGKPIFHFLNTSTFSEYTVVDSACVVKFVSTDHSLSIKNLTLLSCGVSTGVGAAWNTANVHSGSTVAVFGLGAVGLAVAEGARARGASKIIGVDINPDKFIKAMGVTNFINPKDEEKPVYERIREMTDGGVHYSFECTGNVDVLRDAFLSAHEGWGLTVVLGIHASPTLLPIHPMELFDGRNIVGSVFGGFKGRSHLPHFAKQCGQGVVKLDNFITHELPLEEIDKAFDLLITGKSLRCLLHF* 398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso18g1613 397 SUPERFAMILY GroES-like 346 397 IPR011032 -
Gso18g1613 397 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 86 100 IPR002328 GO:0008270|GO:0016491
Gso18g1613 397 PANTHER ALCOHOL DEHYDROGENASE 20 396 - -
Gso18g1613 397 Pfam Zinc-binding dehydrogenase 227 344 IPR013149 -
Gso18g1613 397 SUPERFAMILY GroES-like 20 223 IPR011032 -
Gso18g1613 397 Pfam Alcohol dehydrogenase GroES-like domain 53 181 IPR013154 -
Gso18g1613 397 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 190 358 IPR036291 -
Gso18g1613 397 PANTHER ALCOHOL DEHYDROGENASE-LIKE 3 20 396 - -
Gso18g1613 397 Gene3D - 30 392 - -
Gso18g1613 397 Gene3D - 204 340 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso18g1613 Gso-Chr18 47664862 47670698 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso18g1613 53 339 Monolignol Biosynthesis Gene Families AT4G39330 26.710 2.56e-11 62.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso18g1613 K00001 - gmx:100815166 769.229
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g1613 18 47664862 47670698 Gso7g1265 7 17973880 17980835 GST