Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso18g1611 ATGGGGTTTGGCCTGAAAAGGAGGAAGAAGAGAGGAGAAGGAGAAGGAAAGATGCGCAAGTCTTTCAAGGATTCACTCAAAGCTCTTGAAGCTGACATCCAGTTTGCCAACACACTAGCTTCTGAGTATCCAAGTGCTGGTGCTTGCTTCCAAATGAGATTGTCCTACAGCCCAGCTGCTCAATTCTTCCTTTTTCTGGTTAAGTGGACTGACTGTCACCTTGCTGGAGCTTTAGGATTGCTCAGAATTCTTATATACAAGGCATATGAAGATGGGAAGACAACCATATCCATTTATGAAAGAAAAGCCAGTCTGAAGGAATTCTATGGTGTGGTGTTTCCCTCTTTATTGCAACTTCACAGAGGAATCACTGATGTTGATGACCGGAAACAAAAACATCTATGTGCTACTAAGTATAAGCATAAAGATTTGACAAGCAAAGGAAAGCTTCCTGAGATTGACATGGAGAGAGAAGAAGAGTGTGGTATTTGCTTGGAGATGAATAGCATGGTTGTATTGCCCAACTGCAATCATTCAATGTGTATGAAATGCTATGAAGACTGGCATGCAAGATCTCAGTCTTGTCCTTTCTGTCGAGACAGTCTCAAAAGAGTGAACTCTGATGACCTTTGGATCTGCATTAGCAGCAGTGAGATTAATGACTTGGCTTCGATCAACAAGGAGAATTTGAAAAGACTATTTATGTACATAGAAAGTTTGCCTCTCACTGCCAGACCCCATATTCAGCATGTCATATCATCACCACCAGTGATTGCCAATTAG 783 0.4176 MGFGLKRRKKRGEGEGKMRKSFKDSLKALEADIQFANTLASEYPSAGACFQMRLSYSPAAQFFLFLVKWTDCHLAGALGLLRILIYKAYEDGKTTISIYERKASLKEFYGVVFPSLLQLHRGITDVDDRKQKHLCATKYKHKDLTSKGKLPEIDMEREEECGICLEMNSMVVLPNCNHSMCMKCYEDWHARSQSCPFCRDSLKRVNSDDLWICISSSEINDLASINKENLKRLFMYIESLPLTARPHIQHVISSPPVIAN* 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso18g1611 260 ProSiteProfiles Zinc finger RING-type profile. 161 199 IPR001841 -
Gso18g1611 260 ProSitePatterns Zinc finger RING-type signature. 176 185 IPR017907 -
Gso18g1611 260 Pfam Zinc finger, C3HC4 type (RING finger) 158 204 - -
Gso18g1611 260 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 147 209 IPR013083 -
Gso18g1611 260 SMART ring_2 161 198 IPR001841 -
Gso18g1611 260 PANTHER RING FINGER PROTEIN 41, 151 9 260 - -
Gso18g1611 260 PANTHER ZINC FINGER, C3HC4 TYPE (RING FINGER) PROTEIN 9 260 - -
Gso18g1611 260 SUPERFAMILY RING/U-box 150 204 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso18g1611 Gso-Chr18 47617190 47620617 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso18g1611 105 203 C3H Transcription Factor Family AT5G01960 28.846 1.38e-06 47.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso18g1611 K25840 - gmx:100814293 516.924
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g1611 18 47617190 47620617 Gso7g1260 7 17931738 17935250 GST