Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso18g1610 ATGGGGACAAGCAGTTTTCTATGGAACTGTACTAAAAAATTCATCACAGCCGGGATCGTCACTGTGACTGTGACTGATCATTTTGTGACAGTTATTCCAGTTCGAGGCGGATCTATGTCTCCCACATTTAATCCTAAAGCTGGTTCTCATATGGGAGATGTTTTTGATGACTATGTTTTGGTTGAGAAATTTTGCCTTAGGAATTACAAGTTTTCACATGGCGATGTGGTGGTCTTTCGCTCCCCTCTAAATCACAAGGAGACACACGTAAAGAGAATAGCTGCATTACCTGGTGAATGGTTTGGCACTCATCATAACAATGATGTGATTCAGATTCCATTAGGACATTGTTGGGTTGAAGGAGACAACACCGCTTCTAGCTTGGATTCAAATTCATTTGGACCAATTCCTTTGGCCCTAATTCGGGGAAGGGTTACCCATGTTGTGTGGCCTCCTCAAAGAATAGGAGCTGTCAAGAGTACTCCACCGCAACGATTATCTTCTTTTTAG 510 0.4255 MGTSSFLWNCTKKFITAGIVTVTVTDHFVTVIPVRGGSMSPTFNPKAGSHMGDVFDDYVLVEKFCLRNYKFSHGDVVVFRSPLNHKETHVKRIAALPGEWFGTHHNNDVIQIPLGHCWVEGDNTASSLDSNSFGPIPLALIRGRVTHVVWPPQRIGAVKSTPPQRLSSF* 170
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso18g1610 169 CDD S26_SPase_I 34 145 IPR019533 GO:0004252|GO:0006465
Gso18g1610 169 PRINTS Bacterial leader peptidase 1 (S26A) family signature 27 43 IPR000223 GO:0006508|GO:0008236|GO:0016020
Gso18g1610 169 PRINTS Bacterial leader peptidase 1 (S26A) family signature 89 101 IPR000223 GO:0006508|GO:0008236|GO:0016020
Gso18g1610 169 PRINTS Bacterial leader peptidase 1 (S26A) family signature 112 131 IPR000223 GO:0006508|GO:0008236|GO:0016020
Gso18g1610 169 Pfam Signal peptidase, peptidase S26 10 99 IPR019533 GO:0004252|GO:0006465
Gso18g1610 169 Pfam Signal peptidase, peptidase S26 108 150 IPR019533 GO:0004252|GO:0006465
Gso18g1610 169 Gene3D Umud Fragment, subunit A 24 162 - -
Gso18g1610 169 PANTHER MITOCHONDRIAL INNER MEMBRANE PROTEASE SUBUNIT 2 1 164 IPR037730 GO:0006465|GO:0006627|GO:0008236|GO:0042720
Gso18g1610 169 SUPERFAMILY LexA/Signal peptidase 28 158 IPR036286 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso18g1610 Gso-Chr18 47611670 47615446 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso18g1610 39 162 MADS-box Gene Family AT1G29960 36.154 1.93e-20 80.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso18g1610 K09648 - gmx:100527429 352.443
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g1610 18 47611670 47615446 Gso7g1259 7 17924232 17927634 GST