Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso18g1603 ATGTTTTGCAATTGGTTTGGTGCTTTGAATTGGTGTGGAAGGAGGGATGATCCTGAAGAGCAGCCTCATGAACAAGTGGTTGCAACTAAAAAGTTTAGCTATAACTCATTGAGATCAGCAACTCGAGATTTTCATCCTTCAAGTAAAATCGGTGGAGGAGGTTATGGAGTTGTCTACAAGGGAGTTTTAAGGGATGGTACTCAGGCTGCTATCAAGTCTCTTTCTGTAGAGTCTAAACAGGGAACCCATGAATTTATGACAGAAATTGATATGATATCAAATATACGACATCCAAATCTTGTGGAACTGATTGGCTGCTGTGTTGAGGGTGGTCACCGAATATTGGTTTATGAATTTTTGGAGAACAATAGCCTTGCAAGCTCTTTGCTTGGTTCAAAAGGTAAATATGTTGCTCTGGATTGGCCAAAGAGGGCTGCTATTTGTCGTGGCACGGCTTCTGGTCTAAGTTTTCTTCATGAAGAGGCTCAACCAAACATTGTTCACAGGGATATCAAGGCCAGCAACATATTGCTGGATGGGAGCTTTAATCCGAAAATTGGGGACTTTGGTCTCGCAAAACTTTTTCCTGACAATGTCACCCATGTTAGTACTCGAGTTGCAGGAACTGTGGGATATCTTGCACCAGAATATGCACTTCTGGGACAACTTACAAAGAAGGCAGATGTGTACAGTTTTGGGATTCTCATGCTTGAAATAATCAGTGGGAAAAGTAGTAGCATAGCTGCATTTGAAGAGGATTATTTGGTTTTGGTGGAATGGGCTTGGAAGCTGAAAGGAGAAAATAGGCTTCTGGACCTTGTTGATTCAGAACTAAGTGAATATGATGAGAGTGTGGTGTACCGGTTCCTTATAGTGGCTCTATTTTGCACCCAATCAGCAGCTCAACATAGACCAAGCATGAAGCAAGTATTGGAAATGCTTTCCAAGGAAGTTCATCTCAATGAGAAGGCATTGACTGAGCCTGGAATTTACAGATGGCACAGCACTGGAAAGAAGTGTGGTTCTTTGAATGAGACATCATCTTCTCAAGCAATCAAGTACAAAAGAACCGAAAATCCGCATGAAGCAAATTCAACTCACTTTAGTGGTACAGATATTGTGACAGAGATGCTTCCAAGATGA 1143 0.4164 MFCNWFGALNWCGRRDDPEEQPHEQVVATKKFSYNSLRSATRDFHPSSKIGGGGYGVVYKGVLRDGTQAAIKSLSVESKQGTHEFMTEIDMISNIRHPNLVELIGCCVEGGHRILVYEFLENNSLASSLLGSKGKYVALDWPKRAAICRGTASGLSFLHEEAQPNIVHRDIKASNILLDGSFNPKIGDFGLAKLFPDNVTHVSTRVAGTVGYLAPEYALLGQLTKKADVYSFGILMLEIISGKSSSIAAFEEDYLVLVEWAWKLKGENRLLDLVDSELSEYDESVVYRFLIVALFCTQSAAQHRPSMKQVLEMLSKEVHLNEKALTEPGIYRWHSTGKKCGSLNETSSSQAIKYKRTENPHEANSTHFSGTDIVTEMLPR* 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso18g1603 380 Gene3D Transferase(Phosphotransferase) domain 1 120 328 - -
Gso18g1603 380 Gene3D Phosphorylase Kinase; domain 1 13 119 - -
Gso18g1603 380 SMART serkin_6 44 314 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso18g1603 380 ProSiteProfiles Protein kinase domain profile. 44 320 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso18g1603 380 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 24 365 - -
Gso18g1603 380 ProSitePatterns Protein kinases ATP-binding region signature. 50 72 IPR017441 GO:0005524
Gso18g1603 380 Pfam Protein tyrosine and serine/threonine kinase 47 314 IPR001245 GO:0004672|GO:0006468
Gso18g1603 380 CDD STKc_IRAK 63 316 - -
Gso18g1603 380 ProSitePatterns Serine/Threonine protein kinases active-site signature. 166 178 IPR008271 GO:0004672|GO:0006468
Gso18g1603 380 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 24 365 - -
Gso18g1603 380 SUPERFAMILY Protein kinase-like (PK-like) 23 314 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso18g1603 Gso-Chr18 47530387 47537036 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso18g1603 19 329 Receptor kinase-like Gene Family AT1G56120 51.768 2.21e-104 325
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Gso18g1603 PK_Tyr_Ser-Thr 1.7e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso18g1603 - - gmx:100785766 743.421
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g1603 18 47530387 47537036 Gso7g1256 7 17880691 17886899 GST