Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso18g1600 ATGGCATCAAAATCTGCATTTCGGAGAAAAATGGGCTCTTCTTATGTATTCCAATTTCTTTGTGGAATTCTTCTCTTATTATGCAAGAGCACATGTCAAGACTCAGCAACTGCAGCATCAACCCTTCAAGGAAACGAAACTGATCTACACACTTTACTTGACTTCAAGAGTAGGATAGTTCATGATCCATTCCACATCATGAGTTTGTGGAATGATTCAATCCATCACTGCAATTGGTTAGGAATTACCTGCAACAACTCCAATGGAAGGGTCATGTACTTGATCCTTTCAGACATGACATTATCTGGCACTCTTCCACCATCTATAGGAAATCTCACATTCCTCACCAGACTCAACCTCAGAAATAGTAGTTTCCATGGAGAGTTTCCTCATGAAGTTGGACTTCTACAATACTTGCAACATATAAACATTAGTTACAATTCTTTTGGTGGTAGTATTCCAAGTAATCTAAGTCATTGCACTGAACTAAGTATATTATCTGCTGGTCATAACAATTACACAGGAACAATTCCAGCATGGATTGGAAACTCTTCATCTTTATCTTTACTTAACCTTGCTGTGAACAACTTGCATGGAAGCATACCAAATGAGATAGGGCAATTATCAAGATTGACACTTCTTGCACTGAATGGAAATTACTTGTCTGGAACAATTCCTGGTACTATTTTTAATATTTCTTCCTTGTTCTTCTTCACTGTTTCTCAAAATCATCTGCATGGTAACATACCAGCTGATGTTGGTTACACTTTTCCAAATCTCGAAACATTTGCCGGTGGAGTCAACAGCTTCACTGGAACAATTCCAGAATCACTGTCAAATGCTTCAAGACTAGAAATTCTTGACTTTGCTGAAAATGGCCTAACTGGCACACTTCCTAAGAACATAGGAAGATTGCCCCTTTTAAAAAGACTCAATTTTGATGACAATAGACTTGGAACTGGGAAAGCTGGTGATCTGAATTTTCTTGCTTCCTTGGTTAATTGTACTGCTCTTAAAGTTTTAGGCCTTGCTGATAATAGTTTTGGAGGAGAACTGCCTAGCACAATTGCTAATCTTTCAACTCAATTAACTTCACTTACTTTAGGTGGCAATGGAATACATGGAAGTGTCCCAATTGGGATCAGAAACCTTGTTAACTTAACTTTTCTTGGATTAGAAGAGAACAACCTAAGTGGTTTTGTTCCTCATACAATAGGTATGCTTCGACTATTAAATGGTTTGGATTTGAATGGCAACAACTTTTCTGGGGTAATCCCTTCATCCATTGGAAACTTGACAAGGTTAACAAGGCTACAGATGGAGGAGAACAACTTTGAGGGAAGCATACCAGCCAATCTAGGAAAGTGCCAAAGCTTGTTGATGCTAAATTTAAGCCATAACATGCTCAATGGTACCATACCAAGACAAGTCCTTACCTTGTCTTCTCTTTCAATTTACTTGGACTTGTCTCATAATGCTTTGACAGGGCCTGTGCCTGCTGAAGTGGGCAAGTTGGTCAATCTTGCCCAGTTGGACCTCTCAGAGAACAAATTGTCTGGCATGATTCCATCTTCTCTTGGCAGCTGTATTGGTTTGGAATGGATACATTTGCAAGGTAACTTTTTTGAGGGAAACATTCCTTCAACTATGCGTTATTTGCGAGGCTTACAAGATATAGATCTGTCATGCAATAACTTCTCTGGGAAGATTCCTGAATTTCTTGGTGAGTTCAAAGTGCTAGAGCATCTCAATCTTTCTTACAATGATTTCAGTGGAAAATTACCAATGAATGGAATCTTCAAGAATGCAACTTCCTATTCAGTGTATGGAAACAGCAAGCTCTGTGGCGGTGCCCCAGAGTTAGATTTACCTGCATGCACCATCAAAAAAGCCTCTTCCTTCAGAAAATTTCATGACCCCAAGGTGGTTATCTCTGTAATAGTTGCACTTGTTTTTGTTCTCTTACTATTTTGTTTTCTAGCAATCTCTATGGTAAAAAGAGCAAGAAAGAAAGCTTCTAGATCAACTACTACAAAGGATTTGGACTTGCAAATTTCATACTCAGAAATTGCAAAATGCACTGGTGGATTCTCCCCAGATAACCTTGTTGGCTCAGGAAGTTTTGGTTCTGTGTACAAAGGAACCCTTTCAAGTGATGGATCAAGTGTTGCAGTTAAAGTATTGAATCTTGAACAAAGAGGAGCTTCAAAGAGCTTCATTGACGAGTGCCAAGTCTTAAGAAGTATAAGGCACCGCAACCTTCTCAAGATCATAACAGCTATCTCAAGTGTTGATCATCAAGGTAATGACTTCAAAGCATTGGTGTTTGAGTTCATGCCAAATGGAAGTTTGGAAGATTGGTTGCATCCTGTAGATAATCAGCATAAACAGACAAAGACTTTGTCATTTATCCAAAGACTGAACATAGCAATTGATGTTGCTTGTGCCCTGGAATATCTCCACCACTTTTGTCATACTCCAATTGTTCATTGTGATATAAAGCCAAGTAATGTGCTTCTTGACAATGATATGGTGGCACACGTTGGTGACTTTGGATTAGCTACATTTCTGTTTGAAGAATCAAGCGGTTCTCCCCAACAATCAACCATGTCAGGTGTGCTAAAGGGCTCTATTGGGTATATCCCTCCGGAATATGGAATGGGTGGCCACCCTTCAGCACTGGGAGATATTTACAGTTATGGGATACTATTACTTGAGATTTTCACAGGAAAAAGACCAACTCATGAGATGTTTGAAGGTGTCAGCATGGGAATTCACCAGCTTACAGCCTTGTCTTTACCAAACCATGCCATGGAAATAATTGACCCATTATTGCTCCCTAAGCGAGAATTTGATGATAGAAATGAACAAGTTTCCACAGAGGAGGAAGCAATATTGAGGGAGAATGAACCTGAAGTAATAGAGGGTTGCTTGGTTTCAGTGTTGCAAATAGGAGTGTCATGCTCTGTAACTTCACCACGTGAAAGGGTGCCTATGACTGAGGTCGTCAACAAACTTCATGCAATTAAAAGCTCCTATCTAATACTAAATCAGTTAAAATAG 3063 0.3928 MASKSAFRRKMGSSYVFQFLCGILLLLCKSTCQDSATAASTLQGNETDLHTLLDFKSRIVHDPFHIMSLWNDSIHHCNWLGITCNNSNGRVMYLILSDMTLSGTLPPSIGNLTFLTRLNLRNSSFHGEFPHEVGLLQYLQHINISYNSFGGSIPSNLSHCTELSILSAGHNNYTGTIPAWIGNSSSLSLLNLAVNNLHGSIPNEIGQLSRLTLLALNGNYLSGTIPGTIFNISSLFFFTVSQNHLHGNIPADVGYTFPNLETFAGGVNSFTGTIPESLSNASRLEILDFAENGLTGTLPKNIGRLPLLKRLNFDDNRLGTGKAGDLNFLASLVNCTALKVLGLADNSFGGELPSTIANLSTQLTSLTLGGNGIHGSVPIGIRNLVNLTFLGLEENNLSGFVPHTIGMLRLLNGLDLNGNNFSGVIPSSIGNLTRLTRLQMEENNFEGSIPANLGKCQSLLMLNLSHNMLNGTIPRQVLTLSSLSIYLDLSHNALTGPVPAEVGKLVNLAQLDLSENKLSGMIPSSLGSCIGLEWIHLQGNFFEGNIPSTMRYLRGLQDIDLSCNNFSGKIPEFLGEFKVLEHLNLSYNDFSGKLPMNGIFKNATSYSVYGNSKLCGGAPELDLPACTIKKASSFRKFHDPKVVISVIVALVFVLLLFCFLAISMVKRARKKASRSTTTKDLDLQISYSEIAKCTGGFSPDNLVGSGSFGSVYKGTLSSDGSSVAVKVLNLEQRGASKSFIDECQVLRSIRHRNLLKIITAISSVDHQGNDFKALVFEFMPNGSLEDWLHPVDNQHKQTKTLSFIQRLNIAIDVACALEYLHHFCHTPIVHCDIKPSNVLLDNDMVAHVGDFGLATFLFEESSGSPQQSTMSGVLKGSIGYIPPEYGMGGHPSALGDIYSYGILLLEIFTGKRPTHEMFEGVSMGIHQLTALSLPNHAMEIIDPLLLPKREFDDRNEQVSTEEEAILRENEPEVIEGCLVSVLQIGVSCSVTSPRERVPMTEVVNKLHAIKSSYLILNQLK* 1021
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso18g1600 1020 Gene3D Ribonuclease Inhibitor 325 634 IPR032675 -
Gso18g1600 1020 SMART LRR_typ_2 577 602 IPR003591 -
Gso18g1600 1020 SMART LRR_typ_2 384 407 IPR003591 -
Gso18g1600 1020 SMART LRR_typ_2 505 529 IPR003591 -
Gso18g1600 1020 SMART LRR_typ_2 432 456 IPR003591 -
Gso18g1600 1020 SMART LRR_typ_2 208 232 IPR003591 -
Gso18g1600 1020 SMART LRR_typ_2 408 431 IPR003591 -
Gso18g1600 1020 ProSitePatterns Protein kinases ATP-binding region signature. 703 726 IPR017441 GO:0005524
Gso18g1600 1020 Pfam Leucine rich repeat N-terminal domain 46 85 IPR013210 -
Gso18g1600 1020 SUPERFAMILY Protein kinase-like (PK-like) 677 1006 IPR011009 -
Gso18g1600 1020 Gene3D Ribonuclease Inhibitor 255 324 IPR032675 -
Gso18g1600 1020 Gene3D Ribonuclease Inhibitor 160 253 IPR032675 -
Gso18g1600 1020 SUPERFAMILY L domain-like 361 616 - -
Gso18g1600 1020 Gene3D Phosphorylase Kinase; domain 1 678 778 - -
Gso18g1600 1020 ProSiteProfiles Protein kinase domain profile. 697 1014 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso18g1600 1020 ProSitePatterns Serine/Threonine protein kinases active-site signature. 828 840 IPR008271 GO:0004672|GO:0006468
Gso18g1600 1020 Pfam Protein kinase domain 700 927 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso18g1600 1020 Gene3D Transferase(Phosphotransferase) domain 1 779 1016 - -
Gso18g1600 1020 SUPERFAMILY L domain-like 46 318 - -
Gso18g1600 1020 SMART serkin_6 697 1014 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso18g1600 1020 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 43 172 - -
Gso18g1600 1020 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 163 1010 - -
Gso18g1600 1020 Pfam Leucine Rich Repeat 139 160 IPR001611 GO:0005515
Gso18g1600 1020 CDD STKc_IRAK 703 1006 - -
Gso18g1600 1020 Gene3D Ribonuclease Inhibitor 47 159 IPR032675 -
Gso18g1600 1020 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE, PUTATIVE-RELATED 43 172 - -
Gso18g1600 1020 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE, PUTATIVE-RELATED 163 1010 - -
Gso18g1600 1020 Pfam Leucine rich repeat 531 590 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso18g1600 Gso-Chr18 47496805 47501004 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso18g1600 45 1014 Receptor kinase-like Gene Family AT3G47570 45.129 0.0 798
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Gso18g1600 Pkinase 9.3e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso18g1600 - - gmx:100785230 1954.49
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g1600 18 47496805 47501004 Gso7g1250 7 17801083 17805686 GST