Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso18g1598 ATGCATAAACTTCATACCAATCTCGGAAACCATATCTTTGATTGTATTAGACAATCATTGATTGTTGAATACCCAATACCACCAATGATGTTCATATTTCCTACCCTTCAATCCATGAAGCTTCCATCATTTTGGCTTCTTCTGATTGTAATGTTGTTTTGTGCATTCACTATGGCCACTTCTCGCCATGCAACTATACCATCCTCTGCATCACTCACATTACAACAAACTGAAGCAAATGCTTTGTTGAAGTGGAAAACCAGCCTTGACAACCAAAGTCAGGCTTTGCTATCTTCATGGGGTGGCAATACTCCTTGCAATTGGCTTGGAATTGCTTGTGACCACACCAAATCCGTCTCCAGCATAAATCTTACACACGTTGGATTAAGCGGTCATTTACCTCACAACATTTGCTATAGTGGAAAGTTGACTCGGTTTGCTGCTGATGTTAACTTTTTCACGGGCCCAGTACCAAAGAGTTTGAAGAACTGCTCCAGCCTTACAAGGGTTAGGCTTGAACAAAACCAGCTGACAGGAAATATAACACATGATTTTGGTGTTTATCCGCATCTGGATTACATCAACCTGAGTGAAAATAATTTGTATGGCCATCTTTCCCAAAACTGGGGAAAGTGCTATAATCTCACAAGCCTCAAAATCTCCAACAATAATTTATCAGGCAGTATTCCACCAGAGCTAAGTCAGGCAACCAAGTTACATGTACTTCACCTGTCTTCAAACCATTTGACAGGAGGCATTCCAGAAGATTTTGGTAATTTGACCTACTTGTTCGATCTTTCTATCAATAACAATAATCTTTCTGGAAATGTCCCTATACAAATAGCATCATTGCAAGATCTTGAAACCTTAGACCTTGGAGCAAATTATTTTGCTAGCTTAATTCCAAATCAACTTGGCAATTTGGTCAAGTTATTACATTTGAATTTGAGCCAAAATAATTTTAGGGAAGGTATTCCATCCGAGTTTGGTAAATTAAAGCATCTCCAAAGTCTTGATCTTAGCAGAAACATTTTGAGTGGAACAATACCACCAACGCTCGGAGAGTTGAAAAGCTTAGAAACATTGAATCTCTCACACAATAATCTTTCAGGTGATCTCTCCAGCCTCGACAAGATGGTAAGCTTGATATCAGTTGATATATCATATAACCAATTAGAGGGTTCACTTCCAAACATTCAATTCTTCAAGAATGCTACAATTGAAGCGTTGAGAAATAATAAAGGCTTGTGTGGCAATGTCTCTGGCTTGGAACCATGCCCAAAATTAGGTGACAAATATCAAAACCATAAGACTAACAAAGTCATATTGGTGTTTTTACCCATTGGTTTGGGCACTTTAATGCTAGCATTATTAGCCTTTGGGGTCTCATACTATCTTTGTCAAAGTTCAAAGACAAAAGAAAACCAGGATGAAGAATCACCAGTTCGGAATCTATTTGCAATATGGAGTTTTGATGGAAAAATAGTGTATGAGAACATAGTTGAAGCCACAGAAGATTTTGACAACAAACATCTCATTGGGGTCGGAGGACAAGGAAGTGTTTACAAAGCAAAATTGCACACAGGTCAAATTCTTGCCGTGAAGAAACTCCATTTAGTCCAAAATGGGGAATTGTCCAATATTAAAGCTTTCACAAGTGAAATTCAAGCTTTGATAAACATTCGACATCGTAACATTGTGAAGTTATATGGGTTTTGTTCTCATTCACAATCCTCATTTTTGGTGTATGAGTTCTTGGAAAAGGGAAGCATTGATAAGATTTTAAAAGATGATGAACAAGCAATAGCATTTGATTGGGATCCCAGGATTAATGCCATTAAAGGTGTAGCAAATGCTTTATCTTATATGCATCATGACTGTTCACCTCCAATTGTTCATCGAGATATATCAAGCAAGAATATTGTTTTGGATTTGGAGTATGTGGCTCATGTCTCAGATTTTGGAGCAGCCAGGCTTCTTAATCCTAATTCAACCAATTGGACCTCATTTGTTGGCACTTTTGGATATGCTGCTCCAGAACTTGCATACACAATGGAAGTGAACCAAAAATGCGATGTGTATAGCTTTGGGGTATTAGCATTGGAAATACTTCTTGGAGAGCACCCTGGAGATTTTATAACTTCGTTGTTGACATGTTCATCAAATGCCATGGCGTCAACACTTGATATTCCTTCATTGATGGGTGAGTTAGACCGACGCCTCCCTTATCCTATAAAGCAAATGGCTACAGAGATAGCTTTGATTGCAAAGACAACAATTGCTTGCTTGACTGAAAGCCCTCATTCTCGTCCCACCATGGAGCAAGTTGCCAAGGAGCTTGGAATGTCAAAGTCATCTTTAGTGTATTAA 2370 0.3848 MHKLHTNLGNHIFDCIRQSLIVEYPIPPMMFIFPTLQSMKLPSFWLLLIVMLFCAFTMATSRHATIPSSASLTLQQTEANALLKWKTSLDNQSQALLSSWGGNTPCNWLGIACDHTKSVSSINLTHVGLSGHLPHNICYSGKLTRFAADVNFFTGPVPKSLKNCSSLTRVRLEQNQLTGNITHDFGVYPHLDYINLSENNLYGHLSQNWGKCYNLTSLKISNNNLSGSIPPELSQATKLHVLHLSSNHLTGGIPEDFGNLTYLFDLSINNNNLSGNVPIQIASLQDLETLDLGANYFASLIPNQLGNLVKLLHLNLSQNNFREGIPSEFGKLKHLQSLDLSRNILSGTIPPTLGELKSLETLNLSHNNLSGDLSSLDKMVSLISVDISYNQLEGSLPNIQFFKNATIEALRNNKGLCGNVSGLEPCPKLGDKYQNHKTNKVILVFLPIGLGTLMLALLAFGVSYYLCQSSKTKENQDEESPVRNLFAIWSFDGKIVYENIVEATEDFDNKHLIGVGGQGSVYKAKLHTGQILAVKKLHLVQNGELSNIKAFTSEIQALINIRHRNIVKLYGFCSHSQSSFLVYEFLEKGSIDKILKDDEQAIAFDWDPRINAIKGVANALSYMHHDCSPPIVHRDISSKNIVLDLEYVAHVSDFGAARLLNPNSTNWTSFVGTFGYAAPELAYTMEVNQKCDVYSFGVLALEILLGEHPGDFITSLLTCSSNAMASTLDIPSLMGELDRRLPYPIKQMATEIALIAKTTIACLTESPHSRPTMEQVAKELGMSKSSLVY* 790
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso18g1598 789 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 39 131 - -
Gso18g1598 789 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 131 786 - -
Gso18g1598 789 ProSiteProfiles Leucine-rich repeat profile. 358 380 IPR001611 GO:0005515
Gso18g1598 789 Gene3D Phosphorylase Kinase; domain 1 467 585 - -
Gso18g1598 789 SUPERFAMILY L domain-like 112 406 - -
Gso18g1598 789 Gene3D Transferase(Phosphotransferase) domain 1 586 787 - -
Gso18g1598 789 Gene3D Ribonuclease Inhibitor 190 301 IPR032675 -
Gso18g1598 789 Pfam Leucine rich repeat N-terminal domain 77 114 IPR013210 -
Gso18g1598 789 Pfam Leucine rich repeat 287 343 IPR001611 GO:0005515
Gso18g1598 789 Pfam Protein kinase domain 508 778 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso18g1598 789 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 39 131 - -
Gso18g1598 789 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 131 786 - -
Gso18g1598 789 ProSitePatterns Tyrosine protein kinases specific active-site signature. 631 643 IPR008266 GO:0004672|GO:0006468
Gso18g1598 789 PRINTS Leucine-rich repeat signature 335 348 - -
Gso18g1598 789 PRINTS Leucine-rich repeat signature 356 369 - -
Gso18g1598 789 Gene3D Ribonuclease Inhibitor 302 426 IPR032675 -
Gso18g1598 789 Pfam Leucine Rich Repeat 238 260 IPR001611 GO:0005515
Gso18g1598 789 Gene3D Ribonuclease Inhibitor 77 188 IPR032675 -
Gso18g1598 789 ProSiteProfiles Protein kinase domain profile. 507 782 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso18g1598 789 SUPERFAMILY Protein kinase-like (PK-like) 488 780 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso18g1598 Gso-Chr18 47417602 47421491 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso18g1598 78 679 Receptor kinase-like Gene Family AT4G08850 44.640 3.49e-170 516
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Gso18g1598 Pkinase 1e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso18g1598 - - gmx:100811066 1255.35