Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso18g1597 ATGATGTTCATATTTCCTACCCTTCAATCCATGAAGCTTCCATCATTTTGGCTTCTTCTGATTGTAATGTTGTTTTGTGCATTCACTGTGGCCACTTCTCGCCATGCAACTATACCATCCTCTGCATCACTCACATTACAACAAACTGAAGCAAATGCTTTGTTGAAGTGGAAAGCCAGTCTTCACAACCAAAGTCAGGCTTTGCTATCTTCATGGGGTGGCAATAGTCCTTGCAATTGGCTTGGAATTGCTTGTGACCACACCAAATCCGTCTCCAACATAAATCTTACACGCATTGGATTAAGGGGTCATTTACCTCACAACATTTGCTATAGTGGAAAGTTGACGCGGTTTGCTGTTGAAATTAACTTTTTCACGGGCCCAGTACCAAAGAGTTTGAAGAACTGCTCCAGCCTTAGAAGGGTTAGGCTTGAACAAAACCAGCTGACAGGAAATATAACAGATGATTTTGGTGTTTATCCGCATCTGGATTACATCGACCTGAGTGAAAATAACTTTTATGGCCATCTTTCCCAAAACTGGGGAAAGTGCTATAATCTCACAAGCCTCAAAATCTCCAACAATAATTTATCAGGCAGCATTCCACCAGAGCTAAGTCAGGCAACCAAGTTACATGTACTTCACCTGTCTTCAAACCATCTGACAGGAGGCATTCCAGAAGATTTTGGTAATTTGACCTACTTGTTCCATCTTTCTCTCAATAACAATAATCTTTCTGGAAATGTCCCTATACAAATAGCATCATTGCAAGATCTTGCAACCTTAGACCTTGGAGCAAATTATTTTGCTAGCTTAATTCCAAATCAACTTGGCAATTTGGTCAAGTTATTGCATTTGAATTTGAGCCAAAATAATTTTAGGGAAGGTATTCCATCCGAGTTTGGTAAATTAAAGCATCTCCAAAGTCTTGATCTTAGCAGAAACTTTTTGAGTGGAACAATACCACCAATGCTCGGAGAGTTGAAAAGCTTAGAAACATTGAATCTCTCACACAATAATCTTTCAGGTGGTCTCTCCAGCCTCGACGAGATGGTAAGCTTGATATCAGTTGATATATCATATAACCAATTAGAGGGTTCACTTCCAAACATTCAGTTCTTCAAGAATGCTACAATTGAAGCGTTGAGAAATAATAAAGGCTTGTGTGGCAATGTCTCTGGCTTGGAACCATGCCCAAAATTAGGTGACAAATATCAAAACCATAAGACTAACAAAGTCATATTGGTGTTTTTACCCATTGGTTTAGGCACTTTAATACTAGCATTATTTGCCTTTGGGGTCTCATACTATCTTTGTCAAAGTTCAAAGACAAAAGAAAACCAAGATGAAGAATCACCAATTCGGAATCAATTTGCAATGTGGAGTTTTGATGGAAAAATAGTGTATGAGAACATAGTTGAAGCCACAGAAGATTTTGACAACAAACATCTCATTGGGGTCGGAGGACAAGGAAATGTTTACAAAGCAAAATTGCACACAGGTCAAACTCTAGCCGTGAAGAAACTCCATTTAGTCCAAAATGGGGAATTGTCCAATATTAAAGCTTTCACAAGTGAAATTCAAGCTTTGATAAACATTCGACATCGTAACATTGTGAAGTTATATGGGTTTTGTTCTCATTCACAATCCTCATTTTTGGTGTATGAGTTCTTGGAAAAGGGAAGCATTGATAAGATTTTAAAAGATGATGAACAAGCAATAGCATTTGATTGGGATCCCAGGATTAATGCCATTAAGGGTGTAGCAAATGCTTTATCTTATATGCATCATGACTGTTCACCTCCAATTGTTCATCGAGATATATCAAGCAAGAATATTGTTTTGGATTTGGAGTATGTGGCTCATGTCTCAGATTTTGGAGCAGCCAGGCTTCTTAATCCTAATTCAACCAATTGGACCTCATTTGTTGGCACTTTTGGATATGCTGCTCCAGAACTTGCATACACAATGGAAGTGAACCAAAAATGCGATGTGTATAGCTTTGGGGTATTAGCATTGGAAATACTTCTTGGAGAGCACCCTGGAGATGTTATAACTTCCTTGTTGACATGTTCATCAAATGCCATGGTGTCAACACTTGATATTCCTTCATTGATGGGTAAGTTAGACCAACGCCTCCCTTATCCTATAAATCAAATGGCTAAGGAGATAGCTTTGATTGCAAAGACAGCAATTGCTTGCTTGATTGAATCTCCTCATTCTCGTCCCACCATGGAGCAAGTTGCCAAGGAGCTTGGAATGTCAAAGTCATCTTCAGTGCATTAA 2286 0.388 MMFIFPTLQSMKLPSFWLLLIVMLFCAFTVATSRHATIPSSASLTLQQTEANALLKWKASLHNQSQALLSSWGGNSPCNWLGIACDHTKSVSNINLTRIGLRGHLPHNICYSGKLTRFAVEINFFTGPVPKSLKNCSSLRRVRLEQNQLTGNITDDFGVYPHLDYIDLSENNFYGHLSQNWGKCYNLTSLKISNNNLSGSIPPELSQATKLHVLHLSSNHLTGGIPEDFGNLTYLFHLSLNNNNLSGNVPIQIASLQDLATLDLGANYFASLIPNQLGNLVKLLHLNLSQNNFREGIPSEFGKLKHLQSLDLSRNFLSGTIPPMLGELKSLETLNLSHNNLSGGLSSLDEMVSLISVDISYNQLEGSLPNIQFFKNATIEALRNNKGLCGNVSGLEPCPKLGDKYQNHKTNKVILVFLPIGLGTLILALFAFGVSYYLCQSSKTKENQDEESPIRNQFAMWSFDGKIVYENIVEATEDFDNKHLIGVGGQGNVYKAKLHTGQTLAVKKLHLVQNGELSNIKAFTSEIQALINIRHRNIVKLYGFCSHSQSSFLVYEFLEKGSIDKILKDDEQAIAFDWDPRINAIKGVANALSYMHHDCSPPIVHRDISSKNIVLDLEYVAHVSDFGAARLLNPNSTNWTSFVGTFGYAAPELAYTMEVNQKCDVYSFGVLALEILLGEHPGDVITSLLTCSSNAMVSTLDIPSLMGKLDQRLPYPINQMAKEIALIAKTAIACLIESPHSRPTMEQVAKELGMSKSSSVH* 762
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso18g1597 761 SUPERFAMILY Protein kinase-like (PK-like) 459 752 IPR011009 -
Gso18g1597 761 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 103 758 - -
Gso18g1597 761 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 11 105 - -
Gso18g1597 761 ProSitePatterns Tyrosine protein kinases specific active-site signature. 603 615 IPR008266 GO:0004672|GO:0006468
Gso18g1597 761 Gene3D Ribonuclease Inhibitor 49 160 IPR032675 -
Gso18g1597 761 Gene3D Ribonuclease Inhibitor 273 398 IPR032675 -
Gso18g1597 761 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 103 758 - -
Gso18g1597 761 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 11 105 - -
Gso18g1597 761 ProSiteProfiles Protein kinase domain profile. 479 761 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso18g1597 761 Pfam Leucine rich repeat N-terminal domain 49 86 IPR013210 -
Gso18g1597 761 Pfam Leucine rich repeat 161 221 IPR001611 GO:0005515
Gso18g1597 761 Pfam Leucine rich repeat 259 315 IPR001611 GO:0005515
Gso18g1597 761 Pfam Protein kinase domain 480 750 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso18g1597 761 Gene3D Transferase(Phosphotransferase) domain 1 558 760 - -
Gso18g1597 761 ProSiteProfiles Leucine-rich repeat profile. 330 352 IPR001611 GO:0005515
Gso18g1597 761 Gene3D Ribonuclease Inhibitor 162 272 IPR032675 -
Gso18g1597 761 Gene3D Phosphorylase Kinase; domain 1 438 557 - -
Gso18g1597 761 SUPERFAMILY L domain-like 85 401 - -
Gso18g1597 761 PRINTS Leucine-rich repeat signature 307 320 - -
Gso18g1597 761 PRINTS Leucine-rich repeat signature 328 341 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso18g1597 Gso-Chr18 47395556 47399403 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso18g1597 103 651 Receptor kinase-like Gene Family AT4G08850 47.764 3.59e-169 512
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Gso18g1597 Pkinase 5.2e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso18g1597 - - gmx:100811066 1260.74