Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso18g1586 ATGAATAGGGGAATTGAAGTGCTCTCTCCAGCCTCCTATCTCCAAAACTCCAATTGGTTGTTCCAGGAAAGCAAGGAAGCAAGATGGACTGCAGAAGAGAACAAACTGTTTGAAAATGCCTTGGCTTACTATGATAAGGACACCCCAGATAGATGGATGAGGGTGGCAGCCATGATTCCAGGGAAAACTGTTGGTGATGTGATCAAACAGTACAGAGAGCTTGAGGAAGATGTGAGTGTCATTGAAGCAGGTTTGATCCCAGTTCCTGGCTATACTACTGCCAGTTCTTTCACATTGGAGTGGGTTAACAATCAAGGCTATGATGAGTTCAAGCAGTTCTGTAATGTTGGTGCGAAAAGGGGTGCATCCACGAGGCCAACTGAGCAGGAAAGGAAGAAAGGAGTGCCATGGACTGAAGAGGAGCACAGGCAATTTCTGCTGGGTCTCAAGAAGTATGGTAAAGGGGATTGGAGAAACATCTCTAGGAACTTTGTGACCACAAGGACACCAACTCAGGTTGCAAGTCATGCTCAGAAGTACTTCATCAGGCAGCTTACAGGAGGGAAGGATAAGAGAAGATCCAGTATCCATGACATCACAATGGTTAATCTCCAAGAAACAAAATCTCCTTCATCAGACACTACCAAACCCTCTTCTCCACTTCAGAATCAGGCATTGTCTAGCATGGTTAAGGAGGAATATGAGTGGAAATTGCCATGTGAGGGCATGCCCATTGTTTTCAATTCCACAAGTGGAAACATGTTCATGTCAGCACCACTGCATGGCATTTCTTCATATGAATCTAGACCACAGGAGCAACATTTACTTAGACAATCTCCATGGATGCCAGTTTTCACCTTGTGA 864 0.4491 MNRGIEVLSPASYLQNSNWLFQESKEARWTAEENKLFENALAYYDKDTPDRWMRVAAMIPGKTVGDVIKQYRELEEDVSVIEAGLIPVPGYTTASSFTLEWVNNQGYDEFKQFCNVGAKRGASTRPTEQERKKGVPWTEEEHRQFLLGLKKYGKGDWRNISRNFVTTRTPTQVASHAQKYFIRQLTGGKDKRRSSIHDITMVNLQETKSPSSDTTKPSSPLQNQALSSMVKEEYEWKLPCEGMPIVFNSTSGNMFMSAPLHGISSYESRPQEQHLLRQSPWMPVFTL* 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso18g1586 287 ProSiteProfiles Myb-like domain profile. 129 181 IPR001005 -
Gso18g1586 287 ProSiteProfiles Myb-like domain profile. 21 75 IPR001005 -
Gso18g1586 287 SUPERFAMILY Homeodomain-like 28 82 IPR009057 -
Gso18g1586 287 SUPERFAMILY Homeodomain-like 130 184 IPR009057 -
Gso18g1586 287 Gene3D - 21 88 - -
Gso18g1586 287 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 129 185 IPR017930 -
Gso18g1586 287 PANTHER TRANSCRIPTION FACTOR DIVARICATA 1 258 - -
Gso18g1586 287 CDD SANT 28 74 IPR001005 -
Gso18g1586 287 ProSiteProfiles SANT domain profile. 137 185 IPR017884 -
Gso18g1586 287 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 132 184 IPR006447 GO:0003677
Gso18g1586 287 Pfam Myb-like DNA-binding domain 136 181 IPR001005 -
Gso18g1586 287 Gene3D - 135 185 - -
Gso18g1586 287 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 1 258 IPR043363 -
Gso18g1586 287 SMART sant 25 77 IPR001005 -
Gso18g1586 287 SMART sant 133 183 IPR001005 -
Gso18g1586 287 CDD SANT 136 181 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso18g1586 Gso-Chr18 47062210 47065066 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gso18g1586 Myb_DNA-binding 3.7e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso18g1586 - - gmx:100806787 575.474