Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso18g1579 ATGATAGTTGCTGTGGATTTGAATGCCTCACCTGTGCCAGAGGACGATCAAGATGATTTTGGGGACCAGGTTGAAGAGTACCATGCTCCAGAAGAGCGTGTGGAATCTGCAGTTGATATTGCTCGCCGGGAACGTGAAGAAAGAAAAAGAAAGTTGAAAAGAGAACGTTCAGATGACAAACCTGTGCAAGTATCACAGTCACCTGGACATGATCAGTTATTTCATACTAAGATCCTTAAATCATATGATAGAAGTAAGCTTCCTCCAGGTTGGTTGGATTGCCCTTCATTTGGCCAGGAAATTTATTGCATGATACCATCGAAGGTTCCACTTGGTGAATCATTCAATGACTACATCATTCCTGGTAAAAGATACTCATTTAAACAAGTGATACATCAACAGAGAGTTTTAGGGAGAAAGCTTGGTCTGGTAATTGATTTGACGAATACTTCTCGATACTATCCAGTAGCAGATTTAAAGAAAGAGGGTATCAAGCATGTTAAGATTCAATGCAAGGGCCGCAATTCTGTACCTGATAATTTATCTGTTAATCATTTTGTCTATGAGGTTACACAATTTCTATTTCGTCAAAAACACTCGAGGAAGTATATACTTGTTCATTGTACACATGGTCATAATCGGACAGGATACATGATCATCCATTATCTGATGCGCACAATGTCAATGTCTGTTACTCAGGCAATAAAAATATTTTCTGATGTACGCCCTCCGGGAATCTATAAACCTGAGTACATTGATGCATTATATGCATTTTATCATGAAAAAAAGCCTGAAATGATAGTTTGTCCTCCTACCCCCAAGTGGAAGAGAACTCCTGAGCTTGTTGATCTCAATGGTGAAGCAATGCCAGATGATGACGATGATGATGGAGTGCCAGGCTCTCCTTTGCATGAGAATCATGAGACTGACACTATAATGACAAATGATGATGTTTTGGGTGATGAGATTCCTAATGATCAGCAAGATGCATTTCGTCAGTTCTGCTTTCAAACACTCAAACTAGGTGTTGGGGCCAGAGGGCACATGCAATTCCCAGGGTCACATCCAGTTTCTTTAAACAGGGAGAATTTACAACTGTTACGACAGCGTTATTATTATGCAACATGGAAAGCTGATGGAACAAGATATATGATGCTAATAACTATGGACGGATGTTACTTGATTGATAGAAGCTTCAATTTTCGAAGGGTCCAAATGAGGTTTCCTTGCAGGATTACAAATGATGGCATGGCTGAGAAGACCCACCACTTCACATTACTTGATGGGGAGATGATTATCGATACATTGCCAGATTCAAAAAAGCAGGAAAGGAGATACCTCATATATGATCTGATGGCAGTCAATGGAGTATCAGTAATAGAGCGACCATTTTATGAACGGTGGAAGATGCTTGAGAAAGAAGTGATTGAACCCAGGAATCAGGAACGGTTCCAGAGCAGAAATCCTTACTATAGATATGACATGGAGCCATTCCGGGTGAGGAGAAAAGATTTTTGGTTGCTCTCTACTGTCACAAAGCTTTTAAGCGAATTCATACCAAAACTCTCACATGATGCAGATGGTCTCATATTTCAGGGTTGGGACGATCCTTACATACCTCGCACTCATGAAGGCCTCTTAAAGTGGAAATATGCTGATCTAAATTCAGTTGATTTTCTCTTTGAGATTGATAACGATTGTCAGCTGCTTTTTCTGTATGAACGTGGAAAAAAGAAACTCATGGAAGGGTACAGGGTTGCATTTGAAGAAGGTTCGAATCCCTTGCATTATTCTGGAAAGATCATTGAGTGTTCTTGGGATTCTGATAGACAGGAATGGATATTCAAGCGAATCAGAACAGATAAATCAACTCCAAATGACTTTAATACTTATAGAAAGGTGATGCGAAGTATAAGAGACAATATCACAGAGGATATCCTGTTGAATGAAATAAGTGAGATAATTCGCCTTCCCATGTATGCAGACAGGATAAGAATTGATAGCAAAGCCAATCACCACACCAACATGTCACGGCGAAGGTAA 2043 0.3989 MIVAVDLNASPVPEDDQDDFGDQVEEYHAPEERVESAVDIARREREERKRKLKRERSDDKPVQVSQSPGHDQLFHTKILKSYDRSKLPPGWLDCPSFGQEIYCMIPSKVPLGESFNDYIIPGKRYSFKQVIHQQRVLGRKLGLVIDLTNTSRYYPVADLKKEGIKHVKIQCKGRNSVPDNLSVNHFVYEVTQFLFRQKHSRKYILVHCTHGHNRTGYMIIHYLMRTMSMSVTQAIKIFSDVRPPGIYKPEYIDALYAFYHEKKPEMIVCPPTPKWKRTPELVDLNGEAMPDDDDDDGVPGSPLHENHETDTIMTNDDVLGDEIPNDQQDAFRQFCFQTLKLGVGARGHMQFPGSHPVSLNRENLQLLRQRYYYATWKADGTRYMMLITMDGCYLIDRSFNFRRVQMRFPCRITNDGMAEKTHHFTLLDGEMIIDTLPDSKKQERRYLIYDLMAVNGVSVIERPFYERWKMLEKEVIEPRNQERFQSRNPYYRYDMEPFRVRRKDFWLLSTVTKLLSEFIPKLSHDADGLIFQGWDDPYIPRTHEGLLKWKYADLNSVDFLFEIDNDCQLLFLYERGKKKLMEGYRVAFEEGSNPLHYSGKIIECSWDSDRQEWIFKRIRTDKSTPNDFNTYRKVMRSIRDNITEDILLNEISEIIRLPMYADRIRIDSKANHHTNMSRRR* 681
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso18g1579 680 ProSiteProfiles ATP-dependent DNA ligase family profile. 437 578 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Gso18g1579 680 SUPERFAMILY DNA ligase/mRNA capping enzyme, catalytic domain 315 551 - -
Gso18g1579 680 Gene3D Protein tyrosine phosphatase superfamily 63 280 IPR029021 -
Gso18g1579 680 Gene3D - 572 665 IPR012340 -
Gso18g1579 680 Pfam mRNA capping enzyme, catalytic domain 355 550 IPR001339 GO:0004484|GO:0005524|GO:0006370
Gso18g1579 680 Pfam Dual specificity phosphatase, catalytic domain 139 259 IPR000340 GO:0008138|GO:0016311
Gso18g1579 680 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 184 253 IPR000387 GO:0016311|GO:0016791
Gso18g1579 680 PANTHER MRNA-CAPPING ENZYME 3 680 - -
Gso18g1579 680 PANTHER MRNA (GUANINE-N(7)-)-METHYLTRANSFERASE-RELATED 3 680 - -
Gso18g1579 680 Gene3D DNA ligase/mRNA capping enzyme 314 550 - -
Gso18g1579 680 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 86 275 IPR029021 -
Gso18g1579 680 Coils Coil 38 58 - -
Gso18g1579 680 PIRSF mRNA_capping_HCE 74 680 IPR017074 GO:0004484|GO:0006370|GO:0140818
Gso18g1579 680 CDD RNA_5'-triphosphatase 90 256 - -
Gso18g1579 680 ProSitePatterns Tyrosine specific protein phosphatases active site. 206 216 IPR016130 GO:0016311|GO:0016791
Gso18g1579 680 Pfam mRNA capping enzyme, C-terminal domain 555 647 IPR013846 -
Gso18g1579 680 SMART dsp_5 146 261 IPR020422 GO:0006470|GO:0008138
Gso18g1579 680 MobiDBLite consensus disorder prediction 23 61 - -
Gso18g1579 680 SUPERFAMILY Nucleic acid-binding proteins 553 664 IPR012340 -
Gso18g1579 680 MobiDBLite consensus disorder prediction 285 312 - -
Gso18g1579 680 MobiDBLite consensus disorder prediction 1 68 - -
Gso18g1579 680 MobiDBLite consensus disorder prediction 297 312 - -
Gso18g1579 680 ProSiteProfiles Dual specificity protein phosphatase domain profile. 109 265 IPR020422 GO:0006470|GO:0008138
Gso18g1579 680 CDD Adenylation_mRNA_capping 343 551 IPR001339 GO:0004484|GO:0005524|GO:0006370
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso18g1579 Gso-Chr18 46804427 46831340 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso18g1579 1 670 Protein tyrosine phosphatase (PTP) family AT3G09100 68.296 0.0 942
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso18g1579 K13917 - gmx:100803597 1379