Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso18g1572 ATGCTTCAGATTCGGCTTAGTAAGGCTCCTGCATCAGAAGGGTCGGCAGGGGTGAAGCTGTCGCCGGTTGAGACTGTTACAGTTGCGTGCCCTGACCATCTGGTCCTTGCTGATCTTCCTGTTGCAAAGGGCATTGGTGCGGCCACTACTGCCTCCCTTGTTAAGACTTTGGGCCGTAGGTCCCGCCGCCAGCTTGGCGAGCGAGTCCATTTCTGTGTTCGCTGTGATTTCCCGATTGCCATTTATGGACGCCTGATCCCTTGTGAGCATGCCTTTTGTCTGGATTGTGCTAGAAGTGATTCAATGTGCTACCTGTGTGATGATCGAATTCAGAAGATTCAAACAATTAAAATGATGGAAGGAATCCTCATTTGTGCGGCTCCTCATTGTCTCAAGTCTTTCTTGAAGAAAGCTGATTTTGAATCTCATATCCAAGACAGCCACGGAAACCTTCTTCGACCCAATGCAGATAAAGAAGATGGAAATGAGTCGGAGGCACAGAGTGTTAGGCAATCAACGGCTTCAGATTCCACTGCTCGCGGTCCCCAAAGACCAGTTTTTTCTCCTGGTTCAAATTCCCAGCAACATGATCTGGAAGACAAATCTCGTAGACAGACACCTAGAGAGCAACCACCTTCAAGGCAAACCCAGCAGCCAAAGCCACCATATTATGGTCAACAACAACACCCTTCAGATACCATGTCTGCCTCTGTTGGTGGTGGACAACAGGGCTTTCATCAACAAATTTTTGACATGCAGCATCCCCCACAAGATCCTTCCCAGTTTGCTGACAGACAACAGGCAGTTGGTCCAGAGGCCCCATTTCCCGAGTATCCAGCAATGCACCCTGCACAACCTTCCAATGTTCCCTTGCTGGTTACTTCAAACCCAATGCTGAACCCACCCATGACATTTGGCTATCCCCCATACCTAAACGAACGAGCTCAGCCATTTTACGGTGCTCCCTATGATATGCCTAGGCAGGACTCAGGTTCTGATATAGGTGGGGACCAGAGTTCATTAGTGGGTTTCCCGCAAGGTGTCCCAAATGGCCCAAATTTTCCAGGAAATTATCCCCAGCCATGGAATTCAGGAATGGGTGGTGTGCCTTTTGAACAAGCACAGGGTGGTATGGTTGTGGATCCAAGGGAGGGCAAAGGTATATTGGCACCACAGCCCATGCCCCTCCCACCGCCACCTCCACCTCCATCCCACATGTCATATGGGAAACAGAACTACTATTCTGGGGAGCTTGGGCATGATGGTCAGAGTTATGGGGCGTGGCAGCATGATACCCGTGATAGCTTTGGTAGCCAAGGCTAG 1323 0.5011 MLQIRLSKAPASEGSAGVKLSPVETVTVACPDHLVLADLPVAKGIGAATTASLVKTLGRRSRRQLGERVHFCVRCDFPIAIYGRLIPCEHAFCLDCARSDSMCYLCDDRIQKIQTIKMMEGILICAAPHCLKSFLKKADFESHIQDSHGNLLRPNADKEDGNESEAQSVRQSTASDSTARGPQRPVFSPGSNSQQHDLEDKSRRQTPREQPPSRQTQQPKPPYYGQQQHPSDTMSASVGGGQQGFHQQIFDMQHPPQDPSQFADRQQAVGPEAPFPEYPAMHPAQPSNVPLLVTSNPMLNPPMTFGYPPYLNERAQPFYGAPYDMPRQDSGSDIGGDQSSLVGFPQGVPNGPNFPGNYPQPWNSGMGGVPFEQAQGGMVVDPREGKGILAPQPMPLPPPPPPPSHMSYGKQNYYSGELGHDGQSYGAWQHDTRDSFGSQG* 441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso18g1572 440 MobiDBLite consensus disorder prediction 382 440 - -
Gso18g1572 440 PANTHER E3 UBIQUITIN-PROTEIN LIGASE HAKAI 1 413 - -
Gso18g1572 440 ProSitePatterns Zinc finger C2H2 type domain signature. 125 148 IPR013087 -
Gso18g1572 440 MobiDBLite consensus disorder prediction 147 165 - -
Gso18g1572 440 MobiDBLite consensus disorder prediction 209 242 - -
Gso18g1572 440 MobiDBLite consensus disorder prediction 391 406 - -
Gso18g1572 440 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 69 120 IPR013083 -
Gso18g1572 440 MobiDBLite consensus disorder prediction 166 195 - -
Gso18g1572 440 MobiDBLite consensus disorder prediction 147 242 - -
Gso18g1572 440 CDD RING-HC_HAKAI_like 70 106 IPR040380 -
Gso18g1572 440 ProSitePatterns Zinc finger RING-type signature. 88 97 IPR017907 -
Gso18g1572 440 PANTHER E3 UBIQUITIN-PROTEIN LIGASE HAKAI-RELATED 1 413 IPR040383 GO:0016567|GO:0061630
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso18g1572 Gso-Chr18 46695749 46700397 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso18g1572 1 439 C2H2 Transcription Factor Family AT5G01160 45.880 9.21e-112 331
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso18g1572 K15685 - gmx:100803063 876.315
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g1572 18 46695749 46700397 Gso7g1218 7 17221428 17225619 GST