Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso18g1550 ATGTCCGCTTTGCAGATGTCCCATGTTGATTTGGAGCAAGGGAATGGGAATCATCGCCGGTCGGTTGTTGGAAGTGATGTGAGTGGTGAAGGGAGCTTGTGCTTCTCTGATGTTGATGATGGTTCTTGCTATTCCCGTTTCTACTCAACAAACGGTGGTTCATATGATGATTACAGCTTTGCTTGTGTTTCTGATGCTGAGGTTGGGGGTGTTCCACATTCTGGGAGAGCTTCTTCTGCTTCTGAGTGTTCTGTGGAGGTGGAAGCTAGAAGTGGGGTTCCTGAGATCAAGGTGCATTTGGCTAAAGTAGAAAAGGATTGTAGGATTTGTCACATGGGTTTGGAGAGTGATAGTCATGAGTTTGGTGCCCCCATTGAATTGGGATGTTCTTGTAAGGATGATTTGGCTGCTGCTCACAAGCACTGTGCTGAGGCCTGGTTCAAGATTAAGGGAAATAGGACCTGTGAAATTTGCCATTCTGTTGCTCGGAATGTTTATGGAGGGCACGAGGAGTCGACTGAGCATTTGAGCGACGCTAACAATGCTATTACAGCAGCCACACTCTCTACACCTGCTCCTTCAGCAGAACCTCGAAGATTTTGGCACGGCCATCGCTTCCTGAATTTTCTGCTTGCTTGTATGGTTTTTGCATTTGTCATATCATGGCTTTTCCACTTTAATGTGCCATCATCCTAG 696 0.4655 MSALQMSHVDLEQGNGNHRRSVVGSDVSGEGSLCFSDVDDGSCYSRFYSTNGGSYDDYSFACVSDAEVGGVPHSGRASSASECSVEVEARSGVPEIKVHLAKVEKDCRICHMGLESDSHEFGAPIELGCSCKDDLAAAHKHCAEAWFKIKGNRTCEICHSVARNVYGGHEESTEHLSDANNAITAATLSTPAPSAEPRRFWHGHRFLNFLLACMVFAFVISWLFHFNVPSS* 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso18g1550 231 Pfam RING-variant domain 107 158 IPR011016 GO:0008270
Gso18g1550 231 PANTHER OS01G0850200 PROTEIN 5 230 - -
Gso18g1550 231 SMART ringv_2 106 159 IPR011016 GO:0008270
Gso18g1550 231 SUPERFAMILY RING/U-box 104 162 - -
Gso18g1550 231 MobiDBLite consensus disorder prediction 1 21 - -
Gso18g1550 231 ProSiteProfiles Zinc finger RING-CH-type profile. 99 165 IPR011016 GO:0008270
Gso18g1550 231 CDD RING_CH-C4HC3_MARCH 107 159 - -
Gso18g1550 231 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 95 167 IPR013083 -
Gso18g1550 231 PANTHER ZINC FINGER, RING-CH-TYPE 5 230 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso18g1550 Gso-Chr18 46235502 46238873 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso18g1550 71 231 C3H Transcription Factor Family AT5G05830 61.728 2.47e-68 207
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso18g1550 - - gmx:100808666 434.876
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g1550 18 46235502 46238873 Gso7g1201 7 16889963 16894762 GST