Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso18g1540 ATGGGTGGTGTTGCATGGACAGAAGAAGAAGATCACTTGCTCAAGAAATGCATACAACAATATGGAGAAGGAAAGTGGCATCGTGTTCCTTTACTGGCTGGTTTAAACAGGTGCCGGAAGAGTTGTAGGCTAAGATGGCTGAACTATCTCCGTCCTAACATCAAGAGAGGAAATTTTGCGGAGGAAGAAGTGGAAATGATAATCAAACTCCATAAATTACTAGGCAACAGATGGTCGTTGATTGCAGGAAGGCTACCAGGAAGGACTGCCAATGATGTGAAAAACTATTGGAACTGTCATCTGAGCAAAAAACTAAATGTAATAGAAGCTGAAGATAGACCAATAACAAGAGATGTTCAAGTCATTAGGCCCCAGCCTAGGAACATTGTTGGTTCAAGCTCAGTGAAAAGAAGGGGTCAAAATGAGTCTCCAACTGACAAAGGAGTTCAACAAGAGAGTAGCATGTCCTCACTGACGTTTGATACTGCTGATGGACAGAACCATATGCTTGATTCACAACAAGACAACAACATATATGCATGCCTGGACCAACAGGGCATTGTTAGTGAGTTGTCAATGGATTTTCAGTTCGAAGGATTTGGAGCAATGATGAATGGGGAGGGTAGTAGCAGCCAATGGGATTGGGGTGATTTGCTCTTAGACATGGACTTGTACAAGTGA 681 0.4273 MGGVAWTEEEDHLLKKCIQQYGEGKWHRVPLLAGLNRCRKSCRLRWLNYLRPNIKRGNFAEEEVEMIIKLHKLLGNRWSLIAGRLPGRTANDVKNYWNCHLSKKLNVIEAEDRPITRDVQVIRPQPRNIVGSSSVKRRGQNESPTDKGVQQESSMSSLTFDTADGQNHMLDSQQDNNIYACLDQQGIVSELSMDFQFEGFGAMMNGEGSSSQWDWGDLLLDMDLYK* 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso18g1540 226 ProSiteProfiles Myb-like domain profile. 51 101 IPR001005 -
Gso18g1540 226 SMART sant 2 52 IPR001005 -
Gso18g1540 226 SMART sant 55 103 IPR001005 -
Gso18g1540 226 Pfam Myb-like DNA-binding domain 56 98 IPR001005 -
Gso18g1540 226 Pfam Myb-like DNA-binding domain 5 50 IPR001005 -
Gso18g1540 226 Gene3D - 58 120 - -
Gso18g1540 226 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 51 105 IPR017930 -
Gso18g1540 226 PANTHER MYB TRANSCRIPTION FACTOR 5 225 - -
Gso18g1540 226 MobiDBLite consensus disorder prediction 130 156 - -
Gso18g1540 226 ProSiteProfiles Myb-like domain profile. 6 50 IPR001005 -
Gso18g1540 226 Gene3D - 4 55 - -
Gso18g1540 226 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 5 225 - -
Gso18g1540 226 SUPERFAMILY Homeodomain-like 5 97 IPR009057 -
Gso18g1540 226 CDD SANT 58 101 IPR001005 -
Gso18g1540 226 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 50 IPR017930 -
Gso18g1540 226 CDD SANT 5 50 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso18g1540 Gso-Chr18 45899065 45901085 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso18g1540 5 135 MYB Transcription Factor Family AT1G66370 59.155 5.41e-57 179
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gso18g1540 Myb_DNA-binding 9.4e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso18g1540 K09422 - gmx:100798101 462.225
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g1540 18 45899065 45901085 Gso7g1191 7 16708160 16709827 GST