Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso18g1525 ATGGCTGAGGAGGGTTTTGAGCACTACCATGTCCCACAACAAAGTAGAAGGAACAAGCTGAGAGTTTTCCCTGAGCACCAACCTTATTGTTTCGTTGAATCTTCCTCCACTTGCCCTACTTTAGCCTCTCTCTACGATCCTTCGCTTATTATTCCTTCTGATTTGTTAGCTTGTGCCACCCAACAAGGTGGTGGTGGTGCTGCTGCTAAGGAACAAGAAGGTTCCAATTTGATGATGGGGTTTGTTAAAGGAGCGGTTGTGAATGGTGATGCAATTCAAGTCATCATCAACAACAACAACCCTTTATACCAGCTTCAGAACCTTAGGGAATATGGTGACACCTACAATGATGGGAGTGAAATGATGGTGTTCAAGCCTGAGCCTTTGTCTTTGTCCTTGTCTTCCCACAGTAACAGCACTCATCATTACCCTCTGGAACTGAATCTTCAGCAATATGGGGCTGTTAATCCGGGTTTGGTTGGAGGTAACAGTGAGGTTTCGAGGAATTCTGTTCCACTTGGACCCTTTACGGGGTATGCTTCGATATTGAAGGGATCGAGGTTCTTGAAACCCGCACAGCAATTATTGGAAGAGTTATGTGATGTTGGGGTTCGTGGAATTTACACCACCGAGAAGATTATTGCTCCTGATGCATCGTTGATGGAACCTCCTCGTGAGGGTTTTAGTGCTAGTGAAGTTGTTGGTGGGGATGATCCACTTGGGGAATATCAAAATTATGGTAGGATGAAGAAGTGTAGACTATTAACCATGCTTGACGAGGTTCACAGGAGGTACAGGCAGTATTATCAACAGATGCATGCAGTGATAACTTCATTTGAGTATGTTGCAGGCCTTGGTAATGTGGCCCCGTACGCAAGTTTGGCTATAAATGCCATGTCGAAACCATTTAGATGCTTGAAGAATGCTATTACTGACCAGCTTCAGTTCATCAACAAGGCTCCTTTTCAGATAAGCAACAGAAAGGATGAATCTCCAAGGTTCCACAGCAGTGATAGGGGCACTCACAGCCAAAGGCCAGGGTTTCTTGAGCACCAACAACCAGTTTGGCGACCTCAAAGAGGACTCCCTGAGCGAGCTGTGAGTGTTCTCCGAGCCTGGTTGTTTGAACACTTTCTGCACCCTTATCCTACTGATACTGACAAGTTAATGTTGGCTAAACAAACCGGTCTATCTCGCAACCAGGTGTCTAATTGGTTTATTAATGCAAGAGTAAGGCTTTGGAAACCAATGGTGGAGGAAATACATATGCTAGAATCACAACAAGGTCAAAAGAGGTCACATTGGGAAGAAAGAAGTAAGAAAAACCTAAGTGATCATTTACCTTCAGATCACAACTCTGTTGTTACTGAGAATCCATCCACCTCCATGGAGAAGTTTCATGATGCCCCTTATAAACACCCTAGAAATGAACTTGCTAACAAGCAAGTGAGGAGTCAGGAGCAGCTGAATCAGACCAACACAGGCAATCAGCAAGTCATGGGTGTTGGAGTGAGCAATAATGGGGTGTCTCTCACACTTGGTCTTCACCAAAATCATCACGGTATTGGGTTGTTTGAGCCCTTTGGAATGAGTGCAGCTCAACGTTTTGGCGTTGCCCTTCAGCCTGAGGGCTATGTTCTTAGTAGTTTTGAATCACAAAATCGACATTTTGGAAGAGATGTTATTGGAGGAGGGCAATTGTTGCATGATTTTGCATGCTGA 1722 0.446 MAEEGFEHYHVPQQSRRNKLRVFPEHQPYCFVESSSTCPTLASLYDPSLIIPSDLLACATQQGGGGAAAKEQEGSNLMMGFVKGAVVNGDAIQVIINNNNPLYQLQNLREYGDTYNDGSEMMVFKPEPLSLSLSSHSNSTHHYPLELNLQQYGAVNPGLVGGNSEVSRNSVPLGPFTGYASILKGSRFLKPAQQLLEELCDVGVRGIYTTEKIIAPDASLMEPPREGFSASEVVGGDDPLGEYQNYGRMKKCRLLTMLDEVHRRYRQYYQQMHAVITSFEYVAGLGNVAPYASLAINAMSKPFRCLKNAITDQLQFINKAPFQISNRKDESPRFHSSDRGTHSQRPGFLEHQQPVWRPQRGLPERAVSVLRAWLFEHFLHPYPTDTDKLMLAKQTGLSRNQVSNWFINARVRLWKPMVEEIHMLESQQGQKRSHWEERSKKNLSDHLPSDHNSVVTENPSTSMEKFHDAPYKHPRNELANKQVRSQEQLNQTNTGNQQVMGVGVSNNGVSLTLGLHQNHHGIGLFEPFGMSAAQRFGVALQPEGYVLSSFESQNRHFGRDVIGGGQLLHDFAC* 574
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso18g1525 573 SMART prehox3 177 312 IPR006563 -
Gso18g1525 573 MobiDBLite consensus disorder prediction 448 463 - -
Gso18g1525 573 PANTHER BEL1-LIKE HOMEODOMAIN PROTEIN 87 549 - -
Gso18g1525 573 PANTHER BEL1-LIKE HOMEODOMAIN PROTEIN 35 84 - -
Gso18g1525 573 ProSiteProfiles 'Homeobox' domain profile. 353 416 IPR001356 GO:0003677
Gso18g1525 573 Pfam Homeobox KN domain 373 412 IPR008422 GO:0003677|GO:0006355
Gso18g1525 573 MobiDBLite consensus disorder prediction 327 355 - -
Gso18g1525 573 Gene3D - 359 421 - -
Gso18g1525 573 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 87 549 - -
Gso18g1525 573 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 35 84 - -
Gso18g1525 573 SUPERFAMILY Homeodomain-like 358 423 IPR009057 -
Gso18g1525 573 Pfam Associated with HOX 182 311 IPR006563 -
Gso18g1525 573 MobiDBLite consensus disorder prediction 425 467 - -
Gso18g1525 573 SMART HOX_1 356 420 IPR001356 GO:0003677
Gso18g1525 573 CDD homeodomain 356 417 IPR001356 GO:0003677
Gso18g1525 573 MobiDBLite consensus disorder prediction 425 447 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso18g1525 Gso-Chr18 45550643 45557213 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso18g1525 4 572 Homeobox Transcription Factor Family AT5G02030 44.646 1.53e-126 381
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Gso18g1525 POX 1.4e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso18g1525 - - gmx:100790713 1136.32