Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso18g1517 ATGCAAAAGGATGCCAAGCTAGCTTTGGACTGGCCAACAAGGAAAAGAATAGCTTTAGGAGCTGCAAGAGGCTTGCTATATTTGCACAAACAGTATGATCCAAAGATTATTCATAGGGATGTGAGGGCAGCAAATATCTTGCTTGATGATTATTGTGAGGCTGTGGTGGGAGATTTTGGGTTGGCAAAGCTATTAGACCACAAGGATTCACATGTGACAACATCAACATTAGTTCGGTACCAGCTGCCTATGGTCGTCATTGTTTTCAACAATGGTGGTGTCCGTAGACACCCAGAGGAGATAGATGGACTTCATAAAGATGATCCTGGCCCCACAGATTTTGTCCCAAATGCAGGGTATCATGCTTTGATACAAGCTTTTGGTGGAAAGGGCTATCTTGTTGGGACGCGTGATGAACTCAAGTTCGCCTTTTCAGAATCCTTCTCTGCTAGGAAACCAGCTGTAGTAAATATTGTGATCGATCCCTATGCTGGTTCAGAGAGTGGGAGGATGCAACATAAGAATTGA 528 0.4394 MQKDAKLALDWPTRKRIALGAARGLLYLHKQYDPKIIHRDVRAANILLDDYCEAVVGDFGLAKLLDHKDSHVTTSTLVRYQLPMVVIVFNNGGVRRHPEEIDGLHKDDPGPTDFVPNAGYHALIQAFGGKGYLVGTRDELKFAFSESFSARKPAVVNIVIDPYAGSESGRMQHKN* 176
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso18g1517 175 PANTHER TYROSINE KINASE FAMILY PROTEIN 6 75 - -
Gso18g1517 175 ProSiteProfiles Protein kinase domain profile. 1 175 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso18g1517 175 Gene3D - 49 175 - -
Gso18g1517 175 ProSitePatterns Tyrosine protein kinases specific active-site signature. 36 48 IPR008266 GO:0004672|GO:0006468
Gso18g1517 175 PANTHER OS01G0253100 PROTEIN 6 75 IPR045271 GO:0004714|GO:0006468
Gso18g1517 175 SUPERFAMILY Thiamin diphosphate-binding fold (THDP-binding) 75 165 IPR029061 -
Gso18g1517 175 SUPERFAMILY Protein kinase-like (PK-like) 7 76 IPR011009 -
Gso18g1517 175 Pfam Thiamine pyrophosphate enzyme, C-terminal TPP binding domain 73 158 IPR011766 GO:0003824|GO:0030976
Gso18g1517 175 Pfam Protein kinase domain 13 75 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso18g1517 Gso-Chr18 45054323 45057899 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso18g1517 5 75 Receptor kinase-like Gene Family AT5G16000 84.507 3.89e-36 130
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Gso18g1517 TPP_enzyme_C 4.5e-08 CL0254
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso18g1517 K12261 - gsj:114397299 359.377