Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso18g1502 ATGGTGGAAGCCAACCACAAAATATCATACAATAAAAAAAGACTATACTACGAGACATTCAAGGTAGAGTACCAACCACTTCCCCTTCCTCACACACTCTCTTCTCTAAGACATCTATCTCATGCTCCTTCCATATTAGACTCATGTAGCTTTCAATTCCCATCCAAAACCCCACAATTTCCTTCTCTAATTCATTTCCTTTTCCTGATTCAAGGTGGGCATACTCTCATAATGGAGGAGGGTCATTGTTGGATCAAGACTAAGAGAAAATACTCTATGAACTCTAGTATTGATTCACCTACTAATTACCCCTCCTCCTATGATGACTACTCATGGGAAGAACAAGCCTTTGCAAAAGATGCAGCTTGGTCTGGTTGCATATGGCCACCACGATCATATTCTTGTAGGTTTTGCAGAAAGGAATTTAGGTCAGCACAGGCTTTAGGTGGCCATATGAATGTTCATAGAAGAGATAGAGCAAGACTGAAGCAGCCATATAGCCCTGATCAGAATGAAATCCTCAGTGATGGTCTTGAGAAAACCACTCAACAGCAGAGTTCAGTTCAGATTTCTTTTACTTCTTTGGGTTACTTATACCCATCTTCTCTTGATGGATTGGCTCCTAACACTAGCCCTAATTCTGATCCTTATTCTCATGCTCCTGCTTCACCTTCCAAGTTTTTAGCCTCATCAATCAACAAGAGAGGAAGAGAGAAACCCCAGATTCCACTTTACAAAGGATGTCTTGAGTCTTCTCCTGATCTTCCTTCCAAATCCATGTCAAATTTAACTGAAGACTTCAGATTTTGTTCACGTAGGCTCGATCCTGAAGCTGGTGTTGAGAAAATGTTGAAGGGATTGGATTCTGGGTGTAGGAGTACTGAGAGAGATGATGCTAAAACTGATGTGGCTGTGATCTTAAACCTGTTTATGAATCAACCTCACCCACCTGTGAAGTTTGAGACTAAGGAGAAATATACAAGTTTCAAGAAGGGGAAAGCAGATGCTTCATCCATTCCATTCTTCCCCAAATCATGCTCAGCTGATAGGCATCATATGCAGTCACAGATGTATGAATTTAGCCCTAGTTCCATAGAAGAACTAGATCTGGAGCTAAGGCTTGGTTATAGGTCCAAGGTATAG 1143 0.4121 MVEANHKISYNKKRLYYETFKVEYQPLPLPHTLSSLRHLSHAPSILDSCSFQFPSKTPQFPSLIHFLFLIQGGHTLIMEEGHCWIKTKRKYSMNSSIDSPTNYPSSYDDYSWEEQAFAKDAAWSGCIWPPRSYSCRFCRKEFRSAQALGGHMNVHRRDRARLKQPYSPDQNEILSDGLEKTTQQQSSVQISFTSLGYLYPSSLDGLAPNTSPNSDPYSHAPASPSKFLASSINKRGREKPQIPLYKGCLESSPDLPSKSMSNLTEDFRFCSRRLDPEAGVEKMLKGLDSGCRSTERDDAKTDVAVILNLFMNQPHPPVKFETKEKYTSFKKGKADASSIPFFPKSCSADRHHMQSQMYEFSPSSIEELDLELRLGYRSKV* 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso18g1502 380 ProSiteProfiles Zinc finger C2H2 type domain profile. 133 160 IPR013087 -
Gso18g1502 380 ProSitePatterns Zinc finger C2H2 type domain signature. 135 155 IPR013087 -
Gso18g1502 380 MobiDBLite consensus disorder prediction 206 225 - -
Gso18g1502 380 PANTHER OS07G0101800 PROTEIN 78 379 - -
Gso18g1502 380 PANTHER C2H2 AND C2HC ZINC FINGER PROTEIN 78 379 - -
Gso18g1502 380 SUPERFAMILY beta-beta-alpha zinc fingers 130 159 IPR036236 -
Gso18g1502 380 Gene3D Classic Zinc Finger 130 190 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso18g1502 Gso-Chr18 44408752 44410043 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso18g1502 77 170 C2H2 Transcription Factor Family AT5G06070 50.000 7.99e-23 94.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gso18g1502 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso18g1502 - - gsj:114396020 786.949
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g1502 18 44408752 44410043 Gso7g1155 7 16091999 16093497 GST