Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso18g1501 ATGTCTTATTGCAATTTCCCCTTCGCTTTGCAAACTAAGATGGAGTTCAATTCCCAAAACCCTAAAAAATCTGAGATAAGATGGAGCCCAGATAATCAAGGTGGTCCTGGACAAGGGAAGTCTTATTCTTGTTACTTTTGCAAGAGAGGGTTCTCAAATGCACAGGCCCTGGGAGGCCACATGAATATCCATAGAAAAGATAGGGCGGCAAAGCTCAAGCAATCTTCTGAGGAAAACTTGCTTTCATTGGATATCTCAATCAAGGCCACAAGTGATCATCCTAATGACCCTTCTGATTTCGAAGAGAAAATTTTGTTTCGGTTGGGTGCTGGTGAAGAGAAGCATCCTAGAAACCATAAATATCCATTCAATTTTTTTCCTCGCAAAGATGATCATCATGATCATGCACCACAAATTCCCCATCTTCCTTCTTTTGTTTTGGGGCAGATGGTTGAGGAGAAGAAAGCTGAATTAGACCTTGAGCTTAGGTTAGGGCTTCATCCTCGGGAGTCAGCAACATTGAACACTAGATCGTTCTTTTGA 543 0.418 MSYCNFPFALQTKMEFNSQNPKKSEIRWSPDNQGGPGQGKSYSCYFCKRGFSNAQALGGHMNIHRKDRAAKLKQSSEENLLSLDISIKATSDHPNDPSDFEEKILFRLGAGEEKHPRNHKYPFNFFPRKDDHHDHAPQIPHLPSFVLGQMVEEKKAELDLELRLGLHPRESATLNTRSFF* 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso18g1501 180 ProSitePatterns Zinc finger C2H2 type domain signature. 44 64 IPR013087 -
Gso18g1501 180 PANTHER C2H2 AND C2HC ZINC FINGER PROTEIN 2 77 - -
Gso18g1501 180 PANTHER C2H2 AND C2HC ZINC FINGER PROTEIN 81 170 - -
Gso18g1501 180 SUPERFAMILY beta-beta-alpha zinc fingers 39 69 IPR036236 -
Gso18g1501 180 PANTHER OS07G0101800 PROTEIN 2 77 - -
Gso18g1501 180 PANTHER OS07G0101800 PROTEIN 81 170 - -
Gso18g1501 180 MobiDBLite consensus disorder prediction 17 36 - -
Gso18g1501 180 Gene3D Classic Zinc Finger 17 96 - -
Gso18g1501 180 ProSiteProfiles Zinc finger C2H2 type domain profile. 42 69 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso18g1501 Gso-Chr18 44375305 44376401 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso18g1501 38 173 C2H2 Transcription Factor Family AT3G53820 36.364 9.79e-15 66.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gso18g1501 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso18g1501 - - gmx:100527901 380.948
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g1501 18 44375305 44376401 Gso7g1154 7 16072615 16075690 GST