Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso18g1494 ATGTCGTTGAACCGTGGTGGAGGAGGAGAAGAAGATGAACTCTATGAGCAACTATGGAAAGCGTGTGCAGGACCCCATGTGGAAGTTCCTCGTACTGGCCAAAGGGTCTTCTATTTCCCTCAGGGGCACATGGAACAATTAGAAGTATCAACAAATCAGGAACTAAACCAAAGGATTCCACTCTTCAAGCTTCCCTCCAAGATCCTTTGTCGTGTCGTCAACGTCCATTTACTGGCTGAACAAGAAACAGATGAGGTTTATGCACAGATTACTCTAGTGCCGGAATCTAATCAAGCTGAGCCTATGAGCCCTGATCCGTGCCCTGCTGAACTTCCAAGTCCAAGAGTTCACTCCTTCTGCAAGGTCTTAACTGCCTCTGATACAAGCACCCATGGTGGCTTCTCTGTCCTCAGGAAGCATGCCACTGAATGCCTTCCAGCTTTGGACATGTCTAAATCAACCCCAACTCAGGAATTGGTTGCCAAGGATCTTCAGGGCTATGAATGGCGCTTTAAGCATATATTTAGAGGTCAGCCACGTAGACACTTGCTCACAACTGGATGGAGTAATTTTGTGACTTCCAAGAGATTAGTTGCTGGAGACACCTTTGTGTTTCTGAGAGGGAACAATGGAGAATTGCGGGTTGGAGTGAGGCGCATTGCTCCTGTGCAGAGCAGCATGCCATCATCTGTGATTTCTAGTCAGAGCATGCACCTAGGAGTTCTTGCAACTGCATCTCATGCTGTAGCAACTCAGACTCTTTTTGTTGTATATTATAAGCCAAGGGCAAGCCAGTTCATTGTTAGTGTGAACAAGTATTTGGAGGCTATCAACCAAAAATGTAATGTTGGTATGAGATTCAAGACAAGGTTTGAAGGGGATGAATCCCCTGAAAATTACAAAAGATTTTCGGGCACAATAGTTGGAGTAGAGGATATTTCCCCTCACTGGGTAAATTCAAATTGGCGATCTCTTAAGGTTCAATGGGATGAACCTGCATCTTTTCCAAGACCTGATAGAGTTTTACCATGGGAGATAGAACCCATTCTGGCTTCTGTTCCTACTACATCATCTCAAACTGCTGCTATAAAGAATAAAAGGCCACGGCAAGCAAGTGAACTTGCAGATCTTGGAGACACACCATTAGCTTTCCCTACTTTCTGGGATGCTGGACTGACACAGTCTGATATGGCAAAACTTAGTGTCATGGCCGAAATCAAAAGGAGTGACAGTAGTTCCCATATGTGGCATCATAACAGTAAAAGCAGCAACAATGGTATATCAATGAATCAGACAGAAGCAAGTTGGCTATCTTCTCCTTCTCAATTATATCATGACACAACCGATGATAGCAAGAGCATCTCAGCTTGGCCTATTTCAAAACCTCACTCAGAGAGATTGAACAATGATCATTTCCTTGACCAGGTTGACAAGGAGATCAACAAAGTAGAGGCTGCTACAAGTTATAGATTGTTTGGGATTGACCTTATTGATCATGCAAGGAACAACTCTCTTTCTGCAGAGAATGCATCTGGAATCACCTCTGAGTGCAAAATTGATGTAAACCATGTGTCCGATATCTCAAAGGCTTCTAAAGAATGGAACCAAGAACAGCTACAACTATCTCCAAAAGAGACTCAAAGCAAACAAGTTTGTAGCAGAAGTTGCACTAAGGTTCAAATGCAGGGGGTTGCAGTGGGTCGTGCCGTGGATTTGACCACATTGGATGGATATGATCAACTTGTAGATGAATTGGAGAAGATGTTTGACATAAAGGGACAACTTCAACTTAGGAATAAGTGGGAAATTGTCTTCACTGATGATGAAGGGGATATGATGCTTGTTGGTGATGATCCATGGCTTGAATTCTGTAAAATGGTGAGAAGAATCTTCATTTATTCAAGCCAGGATGTGCACAAATTGAGCTCAGGGAGCAAACTACCTATCTCTTCTATGGAAGAGATTGTAACAAGTTTAGACACAACCGAGACCTGA 1995 0.4331 MSLNRGGGGEEDELYEQLWKACAGPHVEVPRTGQRVFYFPQGHMEQLEVSTNQELNQRIPLFKLPSKILCRVVNVHLLAEQETDEVYAQITLVPESNQAEPMSPDPCPAELPSPRVHSFCKVLTASDTSTHGGFSVLRKHATECLPALDMSKSTPTQELVAKDLQGYEWRFKHIFRGQPRRHLLTTGWSNFVTSKRLVAGDTFVFLRGNNGELRVGVRRIAPVQSSMPSSVISSQSMHLGVLATASHAVATQTLFVVYYKPRASQFIVSVNKYLEAINQKCNVGMRFKTRFEGDESPENYKRFSGTIVGVEDISPHWVNSNWRSLKVQWDEPASFPRPDRVLPWEIEPILASVPTTSSQTAAIKNKRPRQASELADLGDTPLAFPTFWDAGLTQSDMAKLSVMAEIKRSDSSSHMWHHNSKSSNNGISMNQTEASWLSSPSQLYHDTTDDSKSISAWPISKPHSERLNNDHFLDQVDKEINKVEAATSYRLFGIDLIDHARNNSLSAENASGITSECKIDVNHVSDISKASKEWNQEQLQLSPKETQSKQVCSRSCTKVQMQGVAVGRAVDLTTLDGYDQLVDELEKMFDIKGQLQLRNKWEIVFTDDEGDMMLVGDDPWLEFCKMVRRIFIYSSQDVHKLSSGSKLPISSMEEIVTSLDTTET* 665
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso18g1494 664 Gene3D - 550 642 - -
Gso18g1494 664 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 8 654 IPR044835 GO:0003677|GO:0006355|GO:0009725
Gso18g1494 664 Pfam AUX/IAA family 486 641 IPR033389 -
Gso18g1494 664 Pfam B3 DNA binding domain 119 219 IPR003340 GO:0003677
Gso18g1494 664 Gene3D - 116 220 IPR015300 -
Gso18g1494 664 SMART B3_2 119 221 IPR003340 GO:0003677
Gso18g1494 664 SUPERFAMILY CAD & PB1 domains 557 630 - -
Gso18g1494 664 Pfam Auxin response factor 245 326 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Gso18g1494 664 ProSiteProfiles B3 DNA-binding domain profile. 119 221 IPR003340 GO:0003677
Gso18g1494 664 Gene3D - 280 353 - -
Gso18g1494 664 SUPERFAMILY DNA-binding pseudobarrel domain 110 248 IPR015300 -
Gso18g1494 664 CDD B3_DNA 117 219 IPR003340 GO:0003677
Gso18g1494 664 ProSiteProfiles PB1 domain profile. 554 635 IPR000270 GO:0005515
Gso18g1494 664 PANTHER AUXIN RESPONSE FACTOR 8 654 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso18g1494 Gso-Chr18 44139606 44146163 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso18g1494 4 647 B3 DNA Binding Superfamily AT4G23980 57.663 0.0 704
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Gso18g1494 AUX_IAA 1.6e-07 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso18g1494 K14486 - gmx:100780060 1340.87
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g1494 18 44139606 44146163 Gso7g1148 7 15996088 16001664 GST