Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso18g1490 ATGGCATCACTGGGATCTCCGTCTTCATCATTCTGGTGCTACCGCTGCAACCGCATCGTTAGGGTTCCACAAAACGACGCCGTTCTCCTCTGCCCAGATTGCAACTCCGGCTTCCTAGAAGAGCTACAAACCCCTCCCCACTCGCGCCGATCCACGCGCGGCGGCGGCGGGTCCCCCTTCAACCCGGTAATCGTCCTCCGCAACGCGAACGACGTCGTCTCGCCCGAAACGCGGAACTTCGAACTCTACTACAACGACGCCGTTTCAGGTTCCTCCGGCCCAAGCACTCTCCGCCCCTTACCGCAAGGAGTAACCGAGTTTCTTTTGGGCTCGGGCTTCGACAATTTACTCGACCAGCTCGACGGCGCCGCGGGGGGCAGCGCTCCGCCTCCCCCCGCGGCGGCGTCGAAAGCGGCGATTGAGTCGATGCCGGTGGTTAAGATCCTCGCGAGCCACACCTACGCAGAATCCCACTGCGCGGTTTGCATGGAGAATTTTGAGATCAACTGCGACGCACGTGAGATGCCGTGCGGGCACGTGTACCACTCAGAGTGCATCGTGCCGTGGCTCTCGGTGAGAAACTCGTGCCCCGTGTGCCGCCACGAGGTTCCTTCCGATGAAGTTGAAGAAAGTAATAGTAATAGTAACAATAATACTGTGGGGTTGACTATTTGGAGACTTCCTGGGGGGGGATTCGCTGTGGGCAGGTTCATCGGAGGGAGGGAGCTCCCGCTGGTTTACACGGAGATGGACGGAGGGTTTAACGGCGCTAACGGCGCTCCCAGAAGAGTCGCTTGGGATAGCTCTGTTGGGAGGTCTAGGGAGAGCAGAGGGTTCGGTTCTGCTCTGAGGAATGTCTTTTCGTATTTCGGGAGGGTGAGGAGCTCGTTTTCTCGCCGAACGAGAAATTCGCGTGCCAACGGAAGATCTCGCTCTTAA 939 0.5857 MASLGSPSSSFWCYRCNRIVRVPQNDAVLLCPDCNSGFLEELQTPPHSRRSTRGGGGSPFNPVIVLRNANDVVSPETRNFELYYNDAVSGSSGPSTLRPLPQGVTEFLLGSGFDNLLDQLDGAAGGSAPPPPAAASKAAIESMPVVKILASHTYAESHCAVCMENFEINCDAREMPCGHVYHSECIVPWLSVRNSCPVCRHEVPSDEVEESNSNSNNNTVGLTIWRLPGGGFAVGRFIGGRELPLVYTEMDGGFNGANGAPRRVAWDSSVGRSRESRGFGSALRNVFSYFGRVRSSFSRRTRNSRANGRSRS* 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso18g1490 312 ProSiteProfiles Zinc finger RING-type profile. 159 200 IPR001841 -
Gso18g1490 312 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 128 206 IPR013083 -
Gso18g1490 312 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 9 275 - -
Gso18g1490 312 CDD RING-H2_PA-TM-RING 158 200 - -
Gso18g1490 312 Pfam zinc-ribbon 10 42 IPR039525 GO:0061630
Gso18g1490 312 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RDUF2 9 275 - -
Gso18g1490 312 Pfam Ring finger domain 158 200 IPR001841 -
Gso18g1490 312 Pfam Protein of unknown function (DUF1117) 220 307 IPR010543 -
Gso18g1490 312 SUPERFAMILY RING/U-box 139 206 - -
Gso18g1490 312 SMART ring_2 159 199 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso18g1490 Gso-Chr18 44053462 44055165 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso18g1490 99 216 C3H Transcription Factor Family AT5G01980 38.983 9.55e-24 99.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso18g1490 - - gmx:121172634 551.592
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g1490 18 44053462 44055165 Gso7g1146 7 15961778 15963505 GST