Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso18g1480 ATGGTATTGAAAGATGGAAGGAGGAGGGGGAGGAAAAAGCTAAGGCCAACCTCTTGGAAAAAGTACAAAGAAGAGCCCTCCAAAAGGCTCACATTCACCGAGGTGCAAAAGTCGCTCGTGGGCAACGTCACATTCCTTCACAGGGTCTTCCTCTTCTTGGAGTATTGGGGCTTGATCAACTACGGCACCACCCCACCTTCTTCTAGTTCGAACGCAAAGGATGTGGAGGAGGAGCATTGCAAGATGTGTTTCGATTGCAACGCAAAGAACCCTACCTGGGCATCCATCACGTATAGGATCTTTCTCTGCATTGATTGCTCCACCATTCACCGCAATCTCGACGTGCACATCAACTTCATGAGGCAAGTTTTTGCTGATTTCAATGAATATCAAGGCTGTGAAAGAACCAAAGGCATGCAAGTACTCAACTTGGGCAGAGAATTTGAGATGCAGAGCATGAAAGAGACTGAAACAATTAAAGGCTACGCTGACCGGCTGTTATGCATAACAAATAGAGTGAGGCTTCTTGGGAAGGACTTTCCTGATGAAAGAATAGTGCAAAAAATTCTGGTCACTATACCCGAGAAGTATGAATCGAAGATATCAGCATTAGAGGAGTCTAAAGACCTGTCAACCATCACCTTGGGAGAACTCATAAATGCTCTACAAGCCAGGAGCAGAGAAGAATGA 690 0.4551 MVLKDGRRRGRKKLRPTSWKKYKEEPSKRLTFTEVQKSLVGNVTFLHRVFLFLEYWGLINYGTTPPSSSSNAKDVEEEHCKMCFDCNAKNPTWASITYRIFLCIDCSTIHRNLDVHINFMRQVFADFNEYQGCERTKGMQVLNLGREFEMQSMKETETIKGYADRLLCITNRVRLLGKDFPDERIVQKILVTIPEKYESKISALEESKDLSTITLGELINALQARSREE* 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso18g1480 229 SMART arf_gap_3 72 210 IPR001164 GO:0005096
Gso18g1480 229 Gene3D - 7 65 IPR036388 -
Gso18g1480 229 PANTHER OS04G0629600 PROTEIN 128 225 - -
Gso18g1480 229 Pfam SWIRM domain 13 61 IPR007526 GO:0005515
Gso18g1480 229 PRINTS HIV Rev interacting protein signature 80 99 IPR001164 GO:0005096
Gso18g1480 229 PRINTS HIV Rev interacting protein signature 99 116 IPR001164 GO:0005096
Gso18g1480 229 SUPERFAMILY Homeodomain-like 15 62 IPR009057 -
Gso18g1480 229 PANTHER ZINC FINGER, CCHC-TYPE-RELATED 128 225 - -
Gso18g1480 229 SUPERFAMILY ArfGap/RecO-like zinc finger 78 134 IPR037278 -
Gso18g1480 229 Pfam gag-polypeptide of LTR copia-type 137 226 - -
Gso18g1480 229 Gene3D Arf GTPase activating protein 69 163 IPR038508 -
Gso18g1480 229 ProSiteProfiles ARF GTPase-activating proteins domain profile. 81 131 IPR001164 GO:0005096
Gso18g1480 229 ProSiteProfiles SWIRM domain profile. 1 70 IPR007526 GO:0005515
Gso18g1480 229 Pfam Putative GTPase activating protein for Arf 76 134 IPR001164 GO:0005096
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso18g1480 Gso-Chr18 43743510 43750934 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso18g1480 67 126 C2H2 Transcription Factor Family AT3G07940 36.923 4.55e-09 53.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SWI/SNF-SWI3 Gso18g1480 Retrotran_gag_2 2.7e-13 CL0523
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso18g1480 - - gsj:114397280 454.521