Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso18g1470 ATGGTAAAATTAGTTCAGAAACTACTGCACCTGCAGGTCCATGACCTAATTCATCTCACTCCTTGCTTGGCCTCACTCCATAAGTACCCCTCCTTCCCTTCACACTTTCCACTCACCCTCAAGCCAACACAACCAACCAACCCCTTCACACACTCTCTCTCTCTCTCTCTTGCAATGGCTGCTATTGTTTTCCTCCACATTGCATCATTGGCCTCTCTTTTTGTTGCAACAAGTGCAAGAATCCCTGGAGTTTACACCGGTGGCCCCTGGCAGAGTGCTCATGCCACCTTCTACGGTGGCAGTGATGCCTCTGGAACAATGGGTGGTGCTTGTGGGTACGGAAACCTGTACAGCCAAGGCTACGGAGTGAACACTGCGGCGCTGAGCACTGCCCTGTTCAACAACGGGCTGAGCTGCGGCGCGTGCTTCGAGATAAAGTGCGACCAGGATCCGCGGTGGTGCAACCCCGGGAGCCCATCGATCCTAATCACTGCGACCAACTTCTGCCCTCCGAACTTCGCCCTTCCGAACGACAATGGCGGATGGTGCAACCCTCCCCGCCCGCACTTCGACCTCGCCATGCCCATGTTCCTCAAGATCGCCCAGTACCGCGCCGGAATCGTCCCCGTCGCTTACCGCCGGGTGCCATGCAGAAAGACAGGGGGCATCAGATTCACAATCAACGGTTTCCGTTACTTCAACCTGGTGCTGATCACCAACGTCGCGGGTGCAGGGGATATCGTGCGCGTGAGCATGAAAGGAAGCAAAACCGCGTGGATGAGCATGAGCCGCAACTGGGGGCAAAACTGGCAATCCAACGCGGTTTTGGTGGGTCAGGCCCTCTCCTTTAGGGTTACCGGCAGTGACCAGCGCACGTCAACCTCCTGGAACGTGGCACCACCTAATTGGCAGTTCGGACAAACCTTCACAGGAAAGAATTTCCGTGTCTAA 951 0.5573 MVKLVQKLLHLQVHDLIHLTPCLASLHKYPSFPSHFPLTLKPTQPTNPFTHSLSLSLAMAAIVFLHIASLASLFVATSARIPGVYTGGPWQSAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFEIKCDQDPRWCNPGSPSILITATNFCPPNFALPNDNGGWCNPPRPHFDLAMPMFLKIAQYRAGIVPVAYRRVPCRKTGGIRFTINGFRYFNLVLITNVAGAGDIVRVSMKGSKTAWMSMSRNWGQNWQSNAVLVGQALSFRVTGSDQRTSTSWNVAPPNWQFGQTFTGKNFRV* 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso18g1470 316 Gene3D - 222 314 IPR036749 -
Gso18g1470 316 PRINTS Expansin signature 120 134 IPR002963 GO:0009664
Gso18g1470 316 PRINTS Expansin signature 147 158 IPR002963 GO:0009664
Gso18g1470 316 PRINTS Expansin signature 161 171 IPR002963 GO:0009664
Gso18g1470 316 PRINTS Expansin signature 180 197 IPR002963 GO:0009664
Gso18g1470 316 PRINTS Expansin signature 197 210 IPR002963 GO:0009664
Gso18g1470 316 PRINTS Expansin signature 221 233 IPR002963 GO:0009664
Gso18g1470 316 PRINTS Expansin signature 233 254 IPR002963 GO:0009664
Gso18g1470 316 PRINTS Expansin signature 268 289 IPR002963 GO:0009664
Gso18g1470 316 PRINTS Expansin signature 297 313 IPR002963 GO:0009664
Gso18g1470 316 Pfam Lytic transglycolase 125 212 IPR009009 -
Gso18g1470 316 SMART dpbb_1 125 212 IPR007112 -
Gso18g1470 316 Gene3D - 76 218 IPR036908 -
Gso18g1470 316 Pfam Expansin C-terminal domain 223 300 IPR007117 -
Gso18g1470 316 SUPERFAMILY PHL pollen allergen 219 311 IPR036749 -
Gso18g1470 316 PANTHER EXPANSIN 60 315 - -
Gso18g1470 316 SUPERFAMILY Barwin-like endoglucanases 89 240 IPR036908 -
Gso18g1470 316 PRINTS Expansin/Lol pI family signature 89 104 IPR007118 GO:0005576
Gso18g1470 316 PRINTS Expansin/Lol pI family signature 107 125 IPR007118 GO:0005576
Gso18g1470 316 PRINTS Expansin/Lol pI family signature 129 147 IPR007118 GO:0005576
Gso18g1470 316 PRINTS Expansin/Lol pI family signature 205 221 IPR007118 GO:0005576
Gso18g1470 316 PRINTS Expansin/Lol pI family signature 259 273 IPR007118 GO:0005576
Gso18g1470 316 PRINTS Expansin/Lol pI family signature 297 311 IPR007118 GO:0005576
Gso18g1470 316 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 108 222 IPR007112 -
Gso18g1470 316 PANTHER EXPANSIN-A15 60 315 IPR002963 GO:0009664
Gso18g1470 316 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 232 311 IPR007117 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso18g1470 Gso-Chr18 43445307 43450503 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso18g1470 73 316 Expansin Gene Family AT2G39700 86.066 1.59e-161 449
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso18g1470 - - gmx:100820154 547.354
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g1470 18 43445307 43450503 Gso7g1131 7 15734191 15738360 GST