Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso18g1468 ATGAAGGATAGGCAACGTTGGAGAGCTGAAGAGGATGCTTTACTTCGTGCATATGTCAAACAGTATGGTCCTAGGGAATGGAATCTCGTGTCTCAGCGCATGAACACACCTCTTAACAGGGATGCCAAGTCATGCTTAGAAAGGTGGAAGAACTACCTCAAACCCGGCATTAAAAAAGGATCTCTTACTGAGGAAGAGCAGCGTCTAGTCATCAATCTTCAAGCAACGCACGGGAACAAGTGGAAGAAAATTGCAGCACAAGTCCCTGGTCGCACTGCGAAGAGGTTAGGGAAGTGGTGGGAAGTGTTCAAAGAGAAGCAGCAAAGGGAAACCAAGGGGAATAGCTGCACTATTGACCCAATTAGCGATAGCAAGTACGAGCATATCCTTGAGAGTTTTGCAGAGAAACTAGTGAAAGAAAGGCCTTCACCATCATTTGTTATGGCTACTTCTAACAGTTCTTTTCTGCACGCTGATGCACCGGCTCCTCCACCGGCCTTGCTTCCATCTTGGCTTTCCAATTCCAATGGCACTGCACCTGTGAGGCCACCTTCCCCTTCTGTGACTCTTAGTCTTTCTCCCTCGACGGTGGCAGCGCCTCCTCCATGGTTGCAGCCCCCTGTGAGAGGACCGGACAATGCTGCTCCTCTTGTTTTGGGGAATGTGGCGCCTCACGGGGCAGTTCTAGCATTTGGTGAGAACATGGTGATGTCTGAGTTGGTGGAGTGCTGCAAGGAGTTGGATGAAGTGCATCATGCTTTGGCCGGACATAAGAAGGAGGCGGCATGGCGGTTAAGTAGGGTGGAGCTGCAGTTGGAGTCCGAGAAGGCCGGCCGAAGGAGGGAGAAGATGGAGGAAATTGAAGCGAAGATCAAAGCTCTGAGAGAGGAGCAAACAGCTGCATTGGATAGAATTGAAGCAGAATATAGGGAGCAGTTGGCAGGGTTGAGAAGAGATGCAGAAAGCAAGGAGCAGAAGTTGGCTGAACAATGGGCTGCAAAACACTTGCGCCTTACTAAGTTTCTAGAACAGGTAGGGTGCAGATCAAGGCTCACTGAACCAAATGGAAGATAG 1074 0.4991 MKDRQRWRAEEDALLRAYVKQYGPREWNLVSQRMNTPLNRDAKSCLERWKNYLKPGIKKGSLTEEEQRLVINLQATHGNKWKKIAAQVPGRTAKRLGKWWEVFKEKQQRETKGNSCTIDPISDSKYEHILESFAEKLVKERPSPSFVMATSNSSFLHADAPAPPPALLPSWLSNSNGTAPVRPPSPSVTLSLSPSTVAAPPPWLQPPVRGPDNAAPLVLGNVAPHGAVLAFGENMVMSELVECCKELDEVHHALAGHKKEAAWRLSRVELQLESEKAGRRREKMEEIEAKIKALREEQTAALDRIEAEYREQLAGLRRDAESKEQKLAEQWAAKHLRLTKFLEQVGCRSRLTEPNGR* 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso18g1468 357 PANTHER TRANSCRIPTION FACTOR AS1 1 357 IPR031055 GO:0005634|GO:0006351|GO:0010338
Gso18g1468 357 Pfam Myb-like DNA-binding domain 7 67 - -
Gso18g1468 357 Coils Coil 277 304 - -
Gso18g1468 357 CDD SANT 6 53 IPR001005 -
Gso18g1468 357 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 58 108 IPR017930 -
Gso18g1468 357 ProSiteProfiles Myb-like domain profile. 1 53 IPR001005 -
Gso18g1468 357 PANTHER PROTEIN ROUGH SHEATH 2 HOMOLOG 1 357 - -
Gso18g1468 357 SMART sant 3 55 IPR001005 -
Gso18g1468 357 SMART sant 58 106 IPR001005 -
Gso18g1468 357 Coils Coil 306 326 - -
Gso18g1468 357 Gene3D - 62 120 - -
Gso18g1468 357 SUPERFAMILY Homeodomain-like 4 98 IPR009057 -
Gso18g1468 357 CDD SANT 63 104 IPR001005 -
Gso18g1468 357 Gene3D - 4 58 - -
Gso18g1468 357 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 57 IPR017930 -
Gso18g1468 357 ProSiteProfiles Myb-like domain profile. 54 104 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso18g1468 Gso-Chr18 43316413 43319343 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso18g1468 1 348 MYB Transcription Factor Family AT2G37630 66.027 5.01e-159 448
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gso18g1468 Myb_DNA-bind_6 3.4e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso18g1468 K09422 - gmx:100819082 679.093