Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Gso18g1466 | ATGAAGGATATGGCTGAGGTGGTGAAATCAGAGGAGTGTTGTCAGGAGAATAAGCAATCTACTGCTGCTTCTTGCTCCTCTGTATCTGAAGGCAGTGGCAGTGCAATTCACAAGTCTCCGGCGATATGTAGCCCCGCATCCACATCACCCTCACATCGGAGGACCACTGGCCCTATAAGGCGTGCTAAGGGTGGTTGGACAGCGCAGGAGGATGAAACATTAAGGAATGCTGTTGCAGTTTTTAAGGGAAAGAGTTGGAAGAAAATAGCTGAGTTTTTCCCTGATAGATCAGAAGTTCAGTGTCTGCACAGATGGCAAAAAGTTCTTAATCCAGAACTTGTTAAAGGACCTTGGACACAGGAGGAGGATGATAAAATTGTTGAACTGGTGTCAAAATATGGGCCTACAAAATGGTCTTTGATAGCCAAGTCTTTACCCGGTCGAATAGGCAAACAATGTCGAGAGCGGTGGCACAATCATCTTAACCCTGACATAAAGAAGGATGCCTGGACTTTGGAAGAGGAATTGTCCTTGATGAATGCTCATCGTATACATGGGAACAAATGGGCTGAAATAGCTAAGGTCCTTCATGGAAGGACTGATAATGCAATAAAGAATCACTGGAATAGTTCTTTGAAGAAAAAGTTGGATTTTTATTTAGCTACAGGAAGACTTCCACCAATTCCTAAGAATAGTCCACAAGTTCCTGTCAAAGATACAATTAGACGTTCTGCTAGTAAATCAATACTTGGTTGTTCAAATAAAGAATTAAATGCAGCTGTTGAAACATCATCTGAAACTACATCCATTAGTAAGCTAGATGACCGGGGCAGGAATCAGTTTGAGTCCTCTGGCACAGTTAGAGAAGTTGGTGATTGTTCAAGTGTTCCTGCAAATGAATCTGCTGATTCTGACTGTGTAGAATGCAAGCCTGGATCATCAAACATTGATCTCAGCTGTAGCAACTCAGAACAATTGTCTAGAGCTAATTTTGGAACAACTTTTGGGCTAATATCTGAGAATTCTGGAATCAATGGAAACTCAAATTTTGAGCATTGTACAAACAATGGTGACATGAGCAGTACCAGGTTAATTGGAACATCTTCTCAAGAAAGCCCTACCTGTGGTTCTTTGTGTTATGAGCCACCACAGTTAGATGGTTCAGTTCCCATAGATTCTCTTTATTTAAATTATATTTGCCAGCAGAATGAGTACTGTCCAAGTCCAACAATGTCACCTATTGGTTTCTTCACTCCACCTCGAGTGAAGGGTAGTCAATTATGCACTGAGACACCTGAATCGATCTTGAAAAAGGCTGCTAATACTTTTCCAAATACTCCTTCCATATTGAGGAGGAGAAAAACTGGGGCCCAAACACTCACCAGTCCCAGTAAAGTTTTGAAAGTAGATAACAATCCACATACTTCTAAAACAGAGAGAACCGATGATGATTCTGGTTCTGGGCATTTCTCCAGGAGTCCAGCAAGCCATGGCAATGGGATTGACATTCCCAACAATAAGGCATTCAATGCATCTCCCCCATACAGGTTAAGATCCAAGCGAACAGCAATTGTCAAGTCAGTGGAGAAACAACTGGAGTTTGCATTTGACAAAGAGAAGAATGACGACAAGAGGAGTAATGTGATGACTGAAGATCGTCTGCATGAAACAAAATTGGTTGTGACATAG | 1689 | 0.4174 | MKDMAEVVKSEECCQENKQSTAASCSSVSEGSGSAIHKSPAICSPASTSPSHRRTTGPIRRAKGGWTAQEDETLRNAVAVFKGKSWKKIAEFFPDRSEVQCLHRWQKVLNPELVKGPWTQEEDDKIVELVSKYGPTKWSLIAKSLPGRIGKQCRERWHNHLNPDIKKDAWTLEEELSLMNAHRIHGNKWAEIAKVLHGRTDNAIKNHWNSSLKKKLDFYLATGRLPPIPKNSPQVPVKDTIRRSASKSILGCSNKELNAAVETSSETTSISKLDDRGRNQFESSGTVREVGDCSSVPANESADSDCVECKPGSSNIDLSCSNSEQLSRANFGTTFGLISENSGINGNSNFEHCTNNGDMSSTRLIGTSSQESPTCGSLCYEPPQLDGSVPIDSLYLNYICQQNEYCPSPTMSPIGFFTPPRVKGSQLCTETPESILKKAANTFPNTPSILRRRKTGAQTLTSPSKVLKVDNNPHTSKTERTDDDSGSGHFSRSPASHGNGIDIPNNKAFNASPPYRLRSKRTAIVKSVEKQLEFAFDKEKNDDKRSNVMTEDRLHETKLVVT* | 563 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Gso18g1466 | 562 | Pfam | Myb-like DNA-binding domain | 115 | 161 | IPR001005 | - | |
Gso18g1466 | 562 | Pfam | Myb-like DNA-binding domain | 167 | 210 | IPR001005 | - | |
Gso18g1466 | 562 | Pfam | Myb-like DNA-binding domain | 63 | 109 | IPR001005 | - | |
Gso18g1466 | 562 | Gene3D | - | 62 | 114 | - | - | |
Gso18g1466 | 562 | MobiDBLite | consensus disorder prediction | 442 | 471 | - | - | |
Gso18g1466 | 562 | MobiDBLite | consensus disorder prediction | 488 | 506 | - | - | |
Gso18g1466 | 562 | Gene3D | - | 168 | 234 | - | - | |
Gso18g1466 | 562 | MobiDBLite | consensus disorder prediction | 263 | 294 | - | - | |
Gso18g1466 | 562 | SMART | sant | 166 | 214 | IPR001005 | - | |
Gso18g1466 | 562 | SMART | sant | 62 | 111 | IPR001005 | - | |
Gso18g1466 | 562 | SMART | sant | 114 | 163 | IPR001005 | - | |
Gso18g1466 | 562 | ProSiteProfiles | Myb-like domain profile. | 110 | 161 | IPR001005 | - | |
Gso18g1466 | 562 | CDD | SANT | 66 | 109 | IPR001005 | - | |
Gso18g1466 | 562 | PANTHER | MYB PROTEIN-RELATED | 22 | 317 | - | - | |
Gso18g1466 | 562 | PANTHER | MYB PROTEIN-RELATED | 370 | 485 | - | - | |
Gso18g1466 | 562 | MobiDBLite | consensus disorder prediction | 25 | 59 | - | - | |
Gso18g1466 | 562 | MobiDBLite | consensus disorder prediction | 472 | 487 | - | - | |
Gso18g1466 | 562 | MobiDBLite | consensus disorder prediction | 41 | 55 | - | - | |
Gso18g1466 | 562 | Gene3D | - | 115 | 166 | - | - | |
Gso18g1466 | 562 | ProSiteProfiles | Myb-type HTH DNA-binding domain profile. | 166 | 216 | IPR017930 | - | |
Gso18g1466 | 562 | SUPERFAMILY | Homeodomain-like | 112 | 208 | IPR009057 | - | |
Gso18g1466 | 562 | SUPERFAMILY | Homeodomain-like | 60 | 116 | IPR009057 | - | |
Gso18g1466 | 562 | ProSiteProfiles | Myb-type HTH DNA-binding domain profile. | 110 | 165 | IPR017930 | - | |
Gso18g1466 | 562 | CDD | SANT | 117 | 161 | IPR001005 | - | |
Gso18g1466 | 562 | ProSiteProfiles | Myb-like domain profile. | 162 | 212 | IPR001005 | - | |
Gso18g1466 | 562 | MobiDBLite | consensus disorder prediction | 442 | 514 | - | - | |
Gso18g1466 | 562 | ProSiteProfiles | Myb-like domain profile. | 58 | 109 | IPR001005 | - | |
Gso18g1466 | 562 | ProSiteProfiles | Myb-type HTH DNA-binding domain profile. | 63 | 109 | IPR017930 | - | |
Gso18g1466 | 562 | CDD | SANT | 169 | 212 | IPR001005 | - | |
Gso18g1466 | 562 | PANTHER | MYB-RELATED PROTEIN B-LIKE | 22 | 317 | - | - | |
Gso18g1466 | 562 | PANTHER | MYB-RELATED PROTEIN B-LIKE | 370 | 485 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Gso18g1466 | Gso-Chr18 | 43247647 | 43257183 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Gso18g1466 | 1 | 544 | MYB Transcription Factor Family | AT3G09370 | 49.911 | 2.48e-157 | 458 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | MYB | Gso18g1466 | Myb_DNA-bind_6 | 4.6e-18 | CL0123 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Gso18g1466 | K09422 | - | gmx:778081 | 1127.46 |