Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso18g1466 ATGAAGGATATGGCTGAGGTGGTGAAATCAGAGGAGTGTTGTCAGGAGAATAAGCAATCTACTGCTGCTTCTTGCTCCTCTGTATCTGAAGGCAGTGGCAGTGCAATTCACAAGTCTCCGGCGATATGTAGCCCCGCATCCACATCACCCTCACATCGGAGGACCACTGGCCCTATAAGGCGTGCTAAGGGTGGTTGGACAGCGCAGGAGGATGAAACATTAAGGAATGCTGTTGCAGTTTTTAAGGGAAAGAGTTGGAAGAAAATAGCTGAGTTTTTCCCTGATAGATCAGAAGTTCAGTGTCTGCACAGATGGCAAAAAGTTCTTAATCCAGAACTTGTTAAAGGACCTTGGACACAGGAGGAGGATGATAAAATTGTTGAACTGGTGTCAAAATATGGGCCTACAAAATGGTCTTTGATAGCCAAGTCTTTACCCGGTCGAATAGGCAAACAATGTCGAGAGCGGTGGCACAATCATCTTAACCCTGACATAAAGAAGGATGCCTGGACTTTGGAAGAGGAATTGTCCTTGATGAATGCTCATCGTATACATGGGAACAAATGGGCTGAAATAGCTAAGGTCCTTCATGGAAGGACTGATAATGCAATAAAGAATCACTGGAATAGTTCTTTGAAGAAAAAGTTGGATTTTTATTTAGCTACAGGAAGACTTCCACCAATTCCTAAGAATAGTCCACAAGTTCCTGTCAAAGATACAATTAGACGTTCTGCTAGTAAATCAATACTTGGTTGTTCAAATAAAGAATTAAATGCAGCTGTTGAAACATCATCTGAAACTACATCCATTAGTAAGCTAGATGACCGGGGCAGGAATCAGTTTGAGTCCTCTGGCACAGTTAGAGAAGTTGGTGATTGTTCAAGTGTTCCTGCAAATGAATCTGCTGATTCTGACTGTGTAGAATGCAAGCCTGGATCATCAAACATTGATCTCAGCTGTAGCAACTCAGAACAATTGTCTAGAGCTAATTTTGGAACAACTTTTGGGCTAATATCTGAGAATTCTGGAATCAATGGAAACTCAAATTTTGAGCATTGTACAAACAATGGTGACATGAGCAGTACCAGGTTAATTGGAACATCTTCTCAAGAAAGCCCTACCTGTGGTTCTTTGTGTTATGAGCCACCACAGTTAGATGGTTCAGTTCCCATAGATTCTCTTTATTTAAATTATATTTGCCAGCAGAATGAGTACTGTCCAAGTCCAACAATGTCACCTATTGGTTTCTTCACTCCACCTCGAGTGAAGGGTAGTCAATTATGCACTGAGACACCTGAATCGATCTTGAAAAAGGCTGCTAATACTTTTCCAAATACTCCTTCCATATTGAGGAGGAGAAAAACTGGGGCCCAAACACTCACCAGTCCCAGTAAAGTTTTGAAAGTAGATAACAATCCACATACTTCTAAAACAGAGAGAACCGATGATGATTCTGGTTCTGGGCATTTCTCCAGGAGTCCAGCAAGCCATGGCAATGGGATTGACATTCCCAACAATAAGGCATTCAATGCATCTCCCCCATACAGGTTAAGATCCAAGCGAACAGCAATTGTCAAGTCAGTGGAGAAACAACTGGAGTTTGCATTTGACAAAGAGAAGAATGACGACAAGAGGAGTAATGTGATGACTGAAGATCGTCTGCATGAAACAAAATTGGTTGTGACATAG 1689 0.4174 MKDMAEVVKSEECCQENKQSTAASCSSVSEGSGSAIHKSPAICSPASTSPSHRRTTGPIRRAKGGWTAQEDETLRNAVAVFKGKSWKKIAEFFPDRSEVQCLHRWQKVLNPELVKGPWTQEEDDKIVELVSKYGPTKWSLIAKSLPGRIGKQCRERWHNHLNPDIKKDAWTLEEELSLMNAHRIHGNKWAEIAKVLHGRTDNAIKNHWNSSLKKKLDFYLATGRLPPIPKNSPQVPVKDTIRRSASKSILGCSNKELNAAVETSSETTSISKLDDRGRNQFESSGTVREVGDCSSVPANESADSDCVECKPGSSNIDLSCSNSEQLSRANFGTTFGLISENSGINGNSNFEHCTNNGDMSSTRLIGTSSQESPTCGSLCYEPPQLDGSVPIDSLYLNYICQQNEYCPSPTMSPIGFFTPPRVKGSQLCTETPESILKKAANTFPNTPSILRRRKTGAQTLTSPSKVLKVDNNPHTSKTERTDDDSGSGHFSRSPASHGNGIDIPNNKAFNASPPYRLRSKRTAIVKSVEKQLEFAFDKEKNDDKRSNVMTEDRLHETKLVVT* 563
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso18g1466 562 Pfam Myb-like DNA-binding domain 115 161 IPR001005 -
Gso18g1466 562 Pfam Myb-like DNA-binding domain 167 210 IPR001005 -
Gso18g1466 562 Pfam Myb-like DNA-binding domain 63 109 IPR001005 -
Gso18g1466 562 Gene3D - 62 114 - -
Gso18g1466 562 MobiDBLite consensus disorder prediction 442 471 - -
Gso18g1466 562 MobiDBLite consensus disorder prediction 488 506 - -
Gso18g1466 562 Gene3D - 168 234 - -
Gso18g1466 562 MobiDBLite consensus disorder prediction 263 294 - -
Gso18g1466 562 SMART sant 166 214 IPR001005 -
Gso18g1466 562 SMART sant 62 111 IPR001005 -
Gso18g1466 562 SMART sant 114 163 IPR001005 -
Gso18g1466 562 ProSiteProfiles Myb-like domain profile. 110 161 IPR001005 -
Gso18g1466 562 CDD SANT 66 109 IPR001005 -
Gso18g1466 562 PANTHER MYB PROTEIN-RELATED 22 317 - -
Gso18g1466 562 PANTHER MYB PROTEIN-RELATED 370 485 - -
Gso18g1466 562 MobiDBLite consensus disorder prediction 25 59 - -
Gso18g1466 562 MobiDBLite consensus disorder prediction 472 487 - -
Gso18g1466 562 MobiDBLite consensus disorder prediction 41 55 - -
Gso18g1466 562 Gene3D - 115 166 - -
Gso18g1466 562 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 166 216 IPR017930 -
Gso18g1466 562 SUPERFAMILY Homeodomain-like 112 208 IPR009057 -
Gso18g1466 562 SUPERFAMILY Homeodomain-like 60 116 IPR009057 -
Gso18g1466 562 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 110 165 IPR017930 -
Gso18g1466 562 CDD SANT 117 161 IPR001005 -
Gso18g1466 562 ProSiteProfiles Myb-like domain profile. 162 212 IPR001005 -
Gso18g1466 562 MobiDBLite consensus disorder prediction 442 514 - -
Gso18g1466 562 ProSiteProfiles Myb-like domain profile. 58 109 IPR001005 -
Gso18g1466 562 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 109 IPR017930 -
Gso18g1466 562 CDD SANT 169 212 IPR001005 -
Gso18g1466 562 PANTHER MYB-RELATED PROTEIN B-LIKE 22 317 - -
Gso18g1466 562 PANTHER MYB-RELATED PROTEIN B-LIKE 370 485 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso18g1466 Gso-Chr18 43247647 43257183 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso18g1466 1 544 MYB Transcription Factor Family AT3G09370 49.911 2.48e-157 458
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gso18g1466 Myb_DNA-bind_6 4.6e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso18g1466 K09422 - gmx:778081 1127.46