Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso18g1441 ATGGCTAGAGGAAAGATCCAGATCAAGAGGATAGAGAACACCACCAAGAAGGCCAACAAGCTCACCATTCTCTGCGATGCCAAGGTTTCTATTATTATGTTCTCCAGCACTGGAAAACTCCACAAGATCGAGCAATCAACTAAGCAGTTCTTCGATCAATACCAGATGATTCTGGGAGTTGATATTTGGAACTCTCATTACGAGAATATGCAAGAGAACTTGAAGAAACTGAAAGAGGTGAATAGGAATCTTCGTAAGGAGTTTAGGTAG 270 0.4148 MARGKIQIKRIENTTKKANKLTILCDAKVSIIMFSSTGKLHKIEQSTKQFFDQYQMILGVDIWNSHYENMQENLKKLKEVNRNLRKEFR* 90
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso18g1441 89 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 88 - -
Gso18g1441 89 PRINTS MADS domain signature 9 24 IPR002100 GO:0003677|GO:0046983
Gso18g1441 89 PRINTS MADS domain signature 24 45 IPR002100 GO:0003677|GO:0046983
Gso18g1441 89 PANTHER APETALA3 1 88 - -
Gso18g1441 89 Gene3D - 6 87 IPR036879 GO:0003677|GO:0046983
Gso18g1441 89 SMART madsneu2 1 46 IPR002100 GO:0003677|GO:0046983
Gso18g1441 89 ProSiteProfiles MADS-box domain profile. 1 47 IPR002100 GO:0003677|GO:0046983
Gso18g1441 89 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 9 41 IPR002100 GO:0003677|GO:0046983
Gso18g1441 89 SUPERFAMILY SRF-like 3 79 IPR036879 GO:0003677|GO:0046983
Gso18g1441 89 Coils Coil 60 89 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso18g1441 Gso-Chr18 42497344 42497916 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso18g1441 1 89 MADS-box Gene Family AT3G54340 52.830 3.25e-29 102
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Gso18g1441 SRF-TF 2.2e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso18g1441 K09264 - gmx:121173957 179.874