Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso18g1433 ATGCTGATTGCTGAAGCGGGTGCTATACCCCACCTTGTTGATCTCCTCTATGCACCTGATGCTGGCACCCAAGAGCATGTAGTTACTGCTCTCCTGAACTTGTCTATCAATGTGGATAATAAAGAGCGCATCATGGCTTCAGAGGCTGTGCCAGGCATCCTTCATGTGCTAGAAAATGGTAGTATGGAAGCTCAGGAAAATGCAGCAGCCACCTTTTTCAGCCTCTCTGGGGTGGATGAGAACAGAGTGGCAATTGGTGCGTCTGGAGCAATCCCAGCATTAGTTACTCTATTTTGTGAGGGAAGTCAAAGAGGGAAGGTGGATGCCGCAAAAGCACTATTCAATCTGTGTTTATCCCAAGGGAACAAAGGACAAGCAATTAGGGCTGGTATTGTCCCTAAGTTGATAGAAATGCTAACAGAACCTGATGGGGATATGAGGGATGAGGCAATGACAATAATGGCTGTAGTGGCTAACCATTCTGATGGACAAGCAGCAATTGGATCTATGAATGTTGTATCCACTTTGGTGGAATTAGTCAGTAACAGATCTCCTGGGAACAAAGAGAATGCAACTTCAGTGTTGCTTCTCCTATGTAATGGAGACCCTTTTTATTTGTCCATTGTCAGTTCACTTGGGTTGGTCAATCCTCTCTTGGACCTGGCAGGAAATGGTTCAGAAGGGCCAAGCGGAAAGCTTCCCAGCTTCTAG 711 0.4613 MLIAEAGAIPHLVDLLYAPDAGTQEHVVTALLNLSINVDNKERIMASEAVPGILHVLENGSMEAQENAAATFFSLSGVDENRVAIGASGAIPALVTLFCEGSQRGKVDAAKALFNLCLSQGNKGQAIRAGIVPKLIEMLTEPDGDMRDEAMTIMAVVANHSDGQAAIGSMNVVSTLVELVSNRSPGNKENATSVLLLLCNGDPFYLSIVSSLGLVNPLLDLAGNGSEGPSGKLPSF* 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso18g1433 236 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 7 49 IPR000225 GO:0005515
Gso18g1433 236 Gene3D - 1 102 IPR011989 -
Gso18g1433 236 Gene3D - 103 230 IPR011989 -
Gso18g1433 236 Pfam Armadillo/beta-catenin-like repeat 2 35 IPR000225 GO:0005515
Gso18g1433 236 Pfam Armadillo/beta-catenin-like repeat 79 117 IPR000225 GO:0005515
Gso18g1433 236 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 1 232 - -
Gso18g1433 236 PANTHER U BOX DOMAIN-CONTAINING 1 232 - -
Gso18g1433 236 SUPERFAMILY ARM repeat 2 226 IPR016024 -
Gso18g1433 236 SMART arm_5 1 36 IPR000225 GO:0005515
Gso18g1433 236 SMART arm_5 119 159 IPR000225 GO:0005515
Gso18g1433 236 SMART arm_5 78 118 IPR000225 GO:0005515
Gso18g1433 236 SMART arm_5 160 200 IPR000225 GO:0005515
Gso18g1433 236 SMART arm_5 37 77 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso18g1433 Gso-Chr18 41776086 41776796 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso18g1433 3 227 U-box Gene Family AT3G46510 60.444 3.09e-87 270
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso18g1433 - - gmx:100817998 455.292