Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso18g1432 ATGGCGGAACCGGAAGCGGAGTCTTTTCGGATGCTCCGGAACCTGACCCGAATCGTGATCCAAATCTCCACCCTCTCCTCCGCCGCATCCTTTGTGCCCATCCTCAAGCCCCAATGCTGCGACCTCGCTCGCCGAATAAGGTTCCTCGCTGCCCTCTTCCAGGAACTGCACGACGACATCGTTTCGAGCCGCGCGGTTCACTTCCTCGCGCTCGAAGACGCGCTCTTCAAGGCCATGGAACTGCTCCGATTCGCCACACGCGCCAGCCAGGTCTTCACGATACTGGATAGAGAGCAAGTTATGTTCGGATTCACTGATGTTGCTGTTCGGTTTGAACATGCATTAAGCATGATCTCCTTTGGCGAGCTTGATGTTTCTGAAGAAATTAAGGAGCAGGTTGCACTTGTGATCACTCAGTTTAGAAGAGCCAAAGCGCAGTTTGATCCGCCTGGTTTTCAGCTTTACGAGCATCTGTTGTTTGTTTACAACCAGAGCTATGATGTGAATACTGAAACTGCTGAACTACGTGTAATCTGTGAAAAGCTACAATTTCTCAATGTGGATGACATCAAGCAAGAGTCACTTGCTCTGCAAAAGATGGTTGTAGACAAGGGTGGCTATTCTCAGAAAAACATACATGATATGTCATTAGTAGTGCTGAAAAAAATTCAAGATTTCTTGGTGATGGAATCTGGAAACAATATTGTGTCACCAAGTGAGGATTTCTCTCATCATACTGATGAGCCATATCTAAAACTATGCCCACAATCACTGGTTATACCTGATGAGTTTCGCTGCCCAATATCTCTAGAGCTAATGAAAGATCCTGTTATCATTTGCACAGGGCAGACATATGATCGATCTTGCATAAAGAAATGGCTTGAAGCAGGGCATAGAACATGTCCCATGACTCAACAGATTCTTTCCACCTCCATCCTCATACCCAACCATGCTTTATATGGCCTGATATCAAGTTGGTGTGAGGCAAATGGAGTGGAACCGCCTAAAAGGTCAGGAAATTTATGGCTCTGTAAGACAACATCAGATGGCTCTTCTGAATTCATAGATCTTGATATCTTAGTGAGCAAACTTTCTTCCAATGATATCGAGGAACTTCGATGTGCAGTAGGGGAGCTCTGA 1140 0.4588 MAEPEAESFRMLRNLTRIVIQISTLSSAASFVPILKPQCCDLARRIRFLAALFQELHDDIVSSRAVHFLALEDALFKAMELLRFATRASQVFTILDREQVMFGFTDVAVRFEHALSMISFGELDVSEEIKEQVALVITQFRRAKAQFDPPGFQLYEHLLFVYNQSYDVNTETAELRVICEKLQFLNVDDIKQESLALQKMVVDKGGYSQKNIHDMSLVVLKKIQDFLVMESGNNIVSPSEDFSHHTDEPYLKLCPQSLVIPDEFRCPISLELMKDPVIICTGQTYDRSCIKKWLEAGHRTCPMTQQILSTSILIPNHALYGLISSWCEANGVEPPKRSGNLWLCKTTSDGSSEFIDLDILVSKLSSNDIEELRCAVGEL* 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso18g1432 379 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 9 379 - -
Gso18g1432 379 SMART Ubox_2 263 326 IPR003613 GO:0004842|GO:0016567
Gso18g1432 379 CDD RING-Ubox_PUB 264 306 IPR045210 -
Gso18g1432 379 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 260 333 IPR013083 -
Gso18g1432 379 SUPERFAMILY RING/U-box 260 335 - -
Gso18g1432 379 ProSiteProfiles U-box domain profile. 259 333 IPR003613 GO:0004842|GO:0016567
Gso18g1432 379 Pfam U-box domain 260 330 IPR003613 GO:0004842|GO:0016567
Gso18g1432 379 PANTHER U BOX DOMAIN-CONTAINING 9 379 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso18g1432 Gso-Chr18 41775686 41782592 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso18g1432 5 379 U-box Gene Family AT3G46510 38.259 3.21e-86 273
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso18g1432 - - gmx:121172605 750.74