Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso18g1427 ATGGAGTGTGAAGTTGAATTACAAGGGGGAGATCTGCATGCAGGGGTGGTAACTGAGCCAAACCCTATTGGTTTTGGCACCATGGAAAACGAACACACTTTGGCGGTTGCTGAGAGAGAGATGTGGCTGAACAGTGACCAAGACGAGTTCCTAGGAGTCAATGATGCTTCCATGTTCTACGCCGATTTCCCTCCTCTCCCTGATTTCCCTTGCATGTCATCATCATCATCTTCTTCTTCAGCACTACCATTTCCTGTGAAGACCATGACATGTTCCACCAGAACCACAACAACAACCACCACTTCCTCTTCTTCCTCTTCCTCATCCTGGGCCGTGTTGAAATCAGATGCTGAGGAAGATGCAGAGAAAAATCATTGCAACCGCTACATGCATGACCAACTTGATGCAACTTTGTCTTCCACTGCTTCCATGGAGGTTTCTCAACAGAAAAACCTCGATCCTGGGCTTGGTGGCCCTGTTGGTGAGTGCATGGATGATGTTATGGACACTTTTGGGTACATGGAGCTTTTGGAGGCCAATGATTTCTTCGACCCTGCCTCTATCTTTCAGAACGAGGATAACGAAAACCCTTTAGTAGATTTCGGCACACTGGAGCAGCATGTGCCGTTGCATGATGAGCAACATGAAATGTTGCATCATCAGCAAGGGAGAACAGAAGAGGTTGATCATCAGGTTCCTGTGTGTGAAGAGATCCAAGGAGATGAAGAAGGTGGTGATGGTGTTGGAGTAGACGATGAGATGAGTAATGTGTTCTTGGAGTGGCTCAAGTCTAACAAGGATAGTGTCTCTGCTAATGATTTGAGGAATGTGAAGCTCAAGAAGGCGACGATTGAAAGTGCTGCGAGGCGGCTAGGGGGAGGAAAAGAAGCCATGAAGCAGTTGCTGAAGCTGATTCTTGAGTGGGTTCAAACCAGCCATCTTCAGAATAAGCGGCGTAAGGAGAATAACGGTAGCAGTATTAGCAGTGCACTTCAGGCACAGTTTCCGGATCCTAGTGTCCAGAACAACCAGAATACACAAAGTGGTTCATTTTCACCTGAATCAAACGCTTGTTTCAACAACCAGACACCGTGGTTGAGTCCTCAAACTTTTGCAACAGATCAGGCTCCTCTCATGGTGCCTCCACAGCAATTTCAACAACCCATGGTTGGGTATGTGGGTGACCCTTACACTAGTGGTGCTGCTTCAAATAACATCACAACTTCTCATAATCATAACAGCAACAACCCCTATCAACCTGGTGCAGAACAATATCACATGTTGGAGTCGGCACATTCATGGCCTCATTCTCAGTTCAATGTTGCTTGTCACTATAGCCAGTCTTTTGGGGACAATAATGGTATTTTCCCACATGGGGGTTTTGGTGGTGGCTATGGCAATAACCAGTACCCTTACCAGTTTTTTCATGGCCCTGGTGATACGTTGATGAGGTTGGGGCCCTCGGCGACGAAGGAAGCGAGGAAGAAGAGAATGGCGAGGCAGAGAAGGTTTCTGTCTCATCACAGGCATCATAATGGTAATCACCAGAATTCAGGGTCAGACCCACATGCAAGATTGGGGGGTGGTGATAATTGCACCACTGGTTTGGCTGCACCTCATCATGCAAATCCTACAGCCAATTGGATGTACTGGCAGGCTATGACGGGCGGTGCGGCGGGTCCTTTGGCTCCCCCGGCCGAGCCGCCAGCTGTGGACCGGTCTGCCTTGCAGACACAGAATTGTCATCAGAGTCGAGTTGCATCAGATAGGAGACAGAAAGAGGCAGAAACCCATTTGCCAGAGCTGGAGGCAAGAGATGGAATTTCCATAACAATGGAAGACATTGGAACTTCACGTGTTTGGAACATGCGCTATAGCATCAGATACTGGCCGAACAACAAAAGCAGAATGTATTTGCTCGAGAACACTGGTGACTTTGTGAGAGCCAATGGACTCCAAGAGGGAGATTTCATAGTGATATACTCAGATGTGAAGTGTGGCAAATATATGATAAGAGGAGTGAAAGTGAGACAACAAGGTGTGAAACCAGAGACCAAGAAAGTAGGAAAATCGCAGAAAAACCAGCATGGGACAGGGACAAATGCATCAACTACAGCTTGTACTGCTGCTAATAATGGCACGCCATCGTCACCGAAAACCAAAGCTGAAAAAAGTAGTAAATTAATATAA 2190 0.4712 MECEVELQGGDLHAGVVTEPNPIGFGTMENEHTLAVAEREMWLNSDQDEFLGVNDASMFYADFPPLPDFPCMSSSSSSSSALPFPVKTMTCSTRTTTTTTTSSSSSSSSWAVLKSDAEEDAEKNHCNRYMHDQLDATLSSTASMEVSQQKNLDPGLGGPVGECMDDVMDTFGYMELLEANDFFDPASIFQNEDNENPLVDFGTLEQHVPLHDEQHEMLHHQQGRTEEVDHQVPVCEEIQGDEEGGDGVGVDDEMSNVFLEWLKSNKDSVSANDLRNVKLKKATIESAARRLGGGKEAMKQLLKLILEWVQTSHLQNKRRKENNGSSISSALQAQFPDPSVQNNQNTQSGSFSPESNACFNNQTPWLSPQTFATDQAPLMVPPQQFQQPMVGYVGDPYTSGAASNNITTSHNHNSNNPYQPGAEQYHMLESAHSWPHSQFNVACHYSQSFGDNNGIFPHGGFGGGYGNNQYPYQFFHGPGDTLMRLGPSATKEARKKRMARQRRFLSHHRHHNGNHQNSGSDPHARLGGGDNCTTGLAAPHHANPTANWMYWQAMTGGAAGPLAPPAEPPAVDRSALQTQNCHQSRVASDRRQKEAETHLPELEARDGISITMEDIGTSRVWNMRYSIRYWPNNKSRMYLLENTGDFVRANGLQEGDFIVIYSDVKCGKYMIRGVKVRQQGVKPETKKVGKSQKNQHGTGTNASTTACTAANNGTPSSPKTKAEKSSKLI* 730
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso18g1427 729 Pfam B3 DNA binding domain 597 672 IPR003340 GO:0003677
Gso18g1427 729 MobiDBLite consensus disorder prediction 336 366 - -
Gso18g1427 729 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 26 722 IPR044800 GO:0003700
Gso18g1427 729 MobiDBLite consensus disorder prediction 92 113 - -
Gso18g1427 729 Gene3D - 580 690 IPR015300 -
Gso18g1427 729 SUPERFAMILY DNA-binding pseudobarrel domain 593 670 IPR015300 -
Gso18g1427 729 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 26 722 - -
Gso18g1427 729 MobiDBLite consensus disorder prediction 679 729 - -
Gso18g1427 729 MobiDBLite consensus disorder prediction 692 723 - -
Gso18g1427 729 MobiDBLite consensus disorder prediction 92 116 - -
Gso18g1427 729 MobiDBLite consensus disorder prediction 507 532 - -
Gso18g1427 729 SMART B3_2 581 677 IPR003340 GO:0003677
Gso18g1427 729 MobiDBLite consensus disorder prediction 560 580 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso18g1427 Gso-Chr18 41582538 41587022 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso18g1427 39 708 B3 DNA Binding Superfamily AT3G24650 42.384 1.76e-133 409
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Gso18g1427 B3 9.9e-10 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso18g1427 - - gmx:100810343 1361.67
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g1427 18 41582538 41587022 Gso8g2963 8 47270760 47275225 GST