Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso18g1426 ATGCTTGTGGTTGAGTTTTTGAGGGAATTGCCAATGTCAATGCCGAGGCAAGCCTTGAGCAACCAAAACCACAACCAAATGTCGAGGCAAGCTTTCATCACAAACCATCACCATCATCATCACCACCACCTTCTCCATGTTCTTCTCTTTACACTTCTTGTTCCTATTTCCTTTGCTGCAAATGATGAAGTTAGTGCATTGGTTTCATGGATGCACAGCTCCTCCAATACAGTTCCTTTAGCTTTTTCTAGTTGGAACCCTTTGGATTCCAATCCTTGCAATTGGTCCTACATCAAATGCTCTTCAGCAAGCCTTGTCACTGAGATAACCATTCAAAATGTTGAGTTAGCCCTTCCCTTCCCTTCAAAAATTTCATCCTTTCCTTTCCTTCAAAAATTGGTCATTTCAGGGGCTAACCTCACTGGAATTATCTCAATTGATATTGGAATTTGCCTTGAGCTTGTAGTCCTTGACCTTAGCTCAAATAGTCTTGTGGGGGGCATTCCTTCAAGTATTGGGAGGCTCAGAAACCTGCAAAACTTGAGCTTGAACTCTAACCATCTCACTGGACAAATCCCAAGTGAGATTGGTGATTGTGTCAATCTCAAGACCCTTGACATCTTTGATAACAATCTTAATGGGGATCTTCCTGTGGAACTAGGAAAGCTGTCAAATCTGGAGGTTATAAGAGCAGGAGGGAACAGTGGCATTGCAGGGAATATTCCAGATGAACTTGGCGATTGCAAGAATTTGTCAGTGTTAGGTCTGGCTGACACTAAAATTTCTGGCTCATTGCCTGCTTCACTGGGTAAGTTAAGCATGCTTCAGACCTTGTCTATTTATAGTACTATGCTCTCTGGTGAGATTCCTCCTGAAATAGGGAACTGCTCAGAGCTTGTGAACTTGTTTTTGTATGAGAATGGTCTCTCTGGCTCCCTGCCAAGAGAGATTGGTAAGCTTCAGAAGCTGGAAAAGATGCTGCTGTGGCAAAATAGTTTTGTTGGGGGCATTCCTGAGGAAATTGGCAACTGTAGAAGCTTGAAGATTCTTGATGTCTCCTTGAATTCTATCTCTGGTGTAATACCTCAGAGTTTGGGGAAGCTCTCAAATCTTGAGGAGCTTATGCTGAGTAACAATAACATCTCTGGTTCAATACCAAAAGCTCTTTCCAATCTCACAAACCTCATACAGTTGCAGTTGGATACAAATCAGCTATCAGGTTCGATTCCACCTGAGCTTGGAAGCTTGACAAAGCTAACAATGTTTTTTGCTTGGCAGAACAAACTTGAAGGTGGCATTCCATCAACATTGGAAGGTTGTAGAAGCCTTGAGGCTTTGGATTTGTCATACAATGCACTCACTGATAGCTTACCCCCAGGCCTGTTTAAGCTTCAAAATTTGACAAAGCTTCTGCTAATCTCTAATGATATTTCTGGCCCCATCCCTCCTGAGATTGGAAAATGCAGTTCCCTCATTCGCCTCCGGCTTGTAGACAACAGAATCAGTGGGGAGATACCGAAAGAAATCGGCTTCCTCAATAGCCTCAATTTCCTTGATCTGTCTGAGAATCACCTTACTGGGTCAGTACCACTTGAGATAGGAAACTGTAAAGAATTGCAAATGCTGAATCTAAGTAATAACTCCCTTTCTGGTGCTTTGCCCAGTTATTTGTCTTCTCTCACAAGGCTGGACGTATTGGATCTTTCTATGAATAACTTTTCTGGTGAGGTTCCAATGAGTATTGGCCAACTCACTTCACTTCTTAGAGTCATCCTAAGCAAAAACTCTTTTTCTGGGCCAATTCCCTCCTCACTTGGGCAATGTTCAGGTCTTCAACTGCTAGACCTTAGCAGCAACAAATTCTCAGGGACCATCCCACCAGAACTGCTTCAAATTGAAGCACTTGATATTTCTCTAAATTTTAGTCATAATGCATTATCTGGAGTGGTCCCACCAGAGATTTCTTCTCTGAACAAACTGTCAGTTCTAGACCTTTCACACAACAACCTTGAAGGTGACTTGATGGCTTTTTCAGGGCTCGAGAATCTTGTTTCTCTGAACATTTCCTTCAACAAGTTCACAGGTTATCTGCCAGACAGCAAGTTATTCCACCAACTATCAGCAACAGATTTGGCTGGAAACCAAGGTTTGTGTCCAAATGGTCATGATTCATGTTTTGTTAGCAATGCTGTAATGACGAAAATGATAAATGGCACTAATTCGAAGAGGTCAGAGATAATCAAACTGGCCATTGGATTGCTCAGTGCCTTGGTTGTTGCAATGGCAATCTTCGGAGCTGTTAAAGTCTTTCGAGCAAGGAAAATGATTCAAGCAGACAAATATTCTGAGGTGGGAGGGGATTCATGGCCTTGGCAGTTCACCCCATTCCAAAAGGTAAATTTCTCTGTGGAACAAGTGTTCAAGTGTTTGGTGGAATCCAATGTGATAGGAAAGGGGTGTTCAGGGATTGTTTATCGCGCTGAAATGGAAAATGGGGATATCATTGCTGTGAAAAGGCTATGGCCAACAACATCGGCTGCAAGATATGATAGTCAAAGTGACAAGTTAGCAGTCAATGGAGGGGTACGCGATTCCTTTTCAGCCGAGGTAAAAACTCTTGGTTCGATCCGCCACAAGAACATTGTAAGATTCTTGGGTTGCTGTTGGAACAGAAACACAAGATTGCTTATGTATGATTACATGCCAAATGGGAGTCTAGGAAGTCTGCTTCATGAACAAAGTGGAAACTGCTTGGAATGGGACATAAGGTTTCGGATAATACTAGGAGCAGCTCAAGGTGTGGCTTATTTGCACCATGACTGTGCTCCTCCCATTGTTCACAGGGATATTAAGGCCAACAATATCCTCATAGGCCCTGAATTTGAACCATACATTGCTGATTTTGGGCTTGCAAAACTTGTTGATGATGGAGATTTTGCTCGATCTTCTAGCACACTAGCTGGTTCCTATGGTTACATTGCTCCTGAGTATGGATACATGATGAAGATAACAGAGAAAAGTGATGTTTATAGCTATGGTATTGTTGTATTAGAGGTACTAACAGGGAAGCAACCAATTGATCCAACAATACCTGATGGACTCCACATTGTTGATTGGGTAAGACATAAAAGAGGTGGAGTTGAAGTGCTAGATGAAAGCTTGCGAGCTCGGCCGGAATCCGAAATTGAGGAGATGTTGCAGACCTTAGGTGTGGCTTTGCTGTGTGTGAACTCAAGCCCAGATGACAGACCGACCATGAAAGATGTGGTAGCAATGATGAAGGAAATTAGGCAGGAGAGAGAGGAATGTGTGAAAGTTGACATGCTTCTTAATGCATCTTCTGCAAATGAGCAACAAGAAAGAAATCATCTCACTGAAGAACCAATGTCAATGATAAGCACCAGCAGCACAAATCTGCATCTGCATTACTCTCCCCATCGCCCTCAAACACCAAAGTAA 3459 0.4264 MLVVEFLRELPMSMPRQALSNQNHNQMSRQAFITNHHHHHHHHLLHVLLFTLLVPISFAANDEVSALVSWMHSSSNTVPLAFSSWNPLDSNPCNWSYIKCSSASLVTEITIQNVELALPFPSKISSFPFLQKLVISGANLTGIISIDIGICLELVVLDLSSNSLVGGIPSSIGRLRNLQNLSLNSNHLTGQIPSEIGDCVNLKTLDIFDNNLNGDLPVELGKLSNLEVIRAGGNSGIAGNIPDELGDCKNLSVLGLADTKISGSLPASLGKLSMLQTLSIYSTMLSGEIPPEIGNCSELVNLFLYENGLSGSLPREIGKLQKLEKMLLWQNSFVGGIPEEIGNCRSLKILDVSLNSISGVIPQSLGKLSNLEELMLSNNNISGSIPKALSNLTNLIQLQLDTNQLSGSIPPELGSLTKLTMFFAWQNKLEGGIPSTLEGCRSLEALDLSYNALTDSLPPGLFKLQNLTKLLLISNDISGPIPPEIGKCSSLIRLRLVDNRISGEIPKEIGFLNSLNFLDLSENHLTGSVPLEIGNCKELQMLNLSNNSLSGALPSYLSSLTRLDVLDLSMNNFSGEVPMSIGQLTSLLRVILSKNSFSGPIPSSLGQCSGLQLLDLSSNKFSGTIPPELLQIEALDISLNFSHNALSGVVPPEISSLNKLSVLDLSHNNLEGDLMAFSGLENLVSLNISFNKFTGYLPDSKLFHQLSATDLAGNQGLCPNGHDSCFVSNAVMTKMINGTNSKRSEIIKLAIGLLSALVVAMAIFGAVKVFRARKMIQADKYSEVGGDSWPWQFTPFQKVNFSVEQVFKCLVESNVIGKGCSGIVYRAEMENGDIIAVKRLWPTTSAARYDSQSDKLAVNGGVRDSFSAEVKTLGSIRHKNIVRFLGCCWNRNTRLLMYDYMPNGSLGSLLHEQSGNCLEWDIRFRIILGAAQGVAYLHHDCAPPIVHRDIKANNILIGPEFEPYIADFGLAKLVDDGDFARSSSTLAGSYGYIAPEYGYMMKITEKSDVYSYGIVVLEVLTGKQPIDPTIPDGLHIVDWVRHKRGGVEVLDESLRARPESEIEEMLQTLGVALLCVNSSPDDRPTMKDVVAMMKEIRQEREECVKVDMLLNASSANEQQERNHLTEEPMSMISTSSTNLHLHYSPHRPQTPK* 1153
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso18g1426 1152 SMART LRR_typ_2 657 679 IPR003591 -
Gso18g1426 1152 SMART LRR_typ_2 680 705 IPR003591 -
Gso18g1426 1152 SMART LRR_typ_2 175 199 IPR003591 -
Gso18g1426 1152 SMART LRR_typ_2 392 416 IPR003591 -
Gso18g1426 1152 SMART LRR_typ_2 440 464 IPR003591 -
Gso18g1426 1152 SMART LRR_typ_2 584 608 IPR003591 -
Gso18g1426 1152 SMART LRR_typ_2 512 536 IPR003591 -
Gso18g1426 1152 SMART LRR_typ_2 368 391 IPR003591 -
Gso18g1426 1152 Gene3D Ribonuclease Inhibitor 62 172 IPR032675 -
Gso18g1426 1152 SMART LRR_sd22_2 368 394 - -
Gso18g1426 1152 SMART LRR_sd22_2 416 448 - -
Gso18g1426 1152 SMART LRR_sd22_2 199 228 - -
Gso18g1426 1152 SMART LRR_sd22_2 151 183 - -
Gso18g1426 1152 SMART LRR_sd22_2 657 682 - -
Gso18g1426 1152 SUPERFAMILY L domain-like 457 718 - -
Gso18g1426 1152 SUPERFAMILY RNI-like 239 526 - -
Gso18g1426 1152 Gene3D Transferase(Phosphotransferase) domain 1 901 1118 - -
Gso18g1426 1152 ProSitePatterns Protein kinases ATP-binding region signature. 816 838 IPR017441 GO:0005524
Gso18g1426 1152 ProSiteProfiles Protein kinase domain profile. 810 1096 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso18g1426 1152 ProSiteProfiles Leucine-rich repeat profile. 659 681 IPR001611 GO:0005515
Gso18g1426 1152 SUPERFAMILY Protein kinase-like (PK-like) 793 1093 IPR011009 -
Gso18g1426 1152 Gene3D Ribonuclease Inhibitor 553 637 IPR032675 -
Gso18g1426 1152 Gene3D Ribonuclease Inhibitor 638 725 IPR032675 -
Gso18g1426 1152 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE RCH1 28 1115 - -
Gso18g1426 1152 SMART serkin_6 810 1093 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso18g1426 1152 ProSitePatterns Serine/Threonine protein kinases active-site signature. 945 957 IPR008271 GO:0004672|GO:0006468
Gso18g1426 1152 SUPERFAMILY L domain-like 61 332 - -
Gso18g1426 1152 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 28 1115 - -
Gso18g1426 1152 ProSiteProfiles Leucine-rich repeat profile. 370 393 IPR001611 GO:0005515
Gso18g1426 1152 Pfam Leucine rich repeat N-terminal domain 60 101 IPR013210 -
Gso18g1426 1152 Gene3D Phosphorylase Kinase; domain 1 794 900 - -
Gso18g1426 1152 PRINTS Leucine-rich repeat signature 515 528 - -
Gso18g1426 1152 PRINTS Leucine-rich repeat signature 657 670 - -
Gso18g1426 1152 Pfam Protein tyrosine and serine/threonine kinase 813 1091 IPR001245 GO:0004672|GO:0006468
Gso18g1426 1152 Gene3D Ribonuclease Inhibitor 456 552 IPR032675 -
Gso18g1426 1152 Gene3D Ribonuclease Inhibitor 173 266 IPR032675 -
Gso18g1426 1152 Pfam Leucine rich repeat 345 405 IPR001611 GO:0005515
Gso18g1426 1152 Gene3D Ribonuclease Inhibitor 360 455 IPR032675 -
Gso18g1426 1152 Gene3D Ribonuclease Inhibitor 267 359 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso18g1426 Gso-Chr18 41555822 41560005 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso18g1426 58 1144 Receptor kinase-like Gene Family AT5G56040 47.278 0.0 959
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Gso18g1426 Pkinase 1.1e-39 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso18g1426 - - gmx:100815339 2168.27
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g1426 18 41555822 41560005 Gso8g2962 8 47259937 47264480 GST