Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso18g1417 ATGGTGTTGATAGAGCATGAAGAGAGCAAGCAGAGAAACGCGAACCCCTCCAACGCCGCCAACGACGATTCCGACGGCTTCGAAACCGCCAGCGACACCGATCTGGCCGGTGAAGGCGACGACAGTGGGGCCGGCATCCCGGAAGAACAGAATCGCACCGAACAGAGTCATACCGAGAAGCAGACGGAGCAAGAGCCGGAACACGATGCTCCTCGGAGCAGCGAATCATCCGAGAACAATGCCCTGATCAGTGAAGAAGAATCGAGACAGAAAGCATTGAATCAAGCAAATGAAGCAAAGGTAGAAGGGAATAAGCTTTTTGTAGAAGGGAAGTATGAAGAGGCATTATTACAATATGAACTTGCTTTACAAGCAGCACCAGACATGCCTTCATCTGTGGAAATACGGTCAATATGCCATTCAAACCGTGGTGTGTGCTTTCTGAAACTGGGAAAATATGATAACACAATTAAAGAATGCACAAAAGCATTAGAATTGAATCCTGTGTACATTAAAGCTTTGGTAAGAAGAGGAGAAGCTCATGAAAAGCTTGAGCATTTTGAAGAGGCTATTGCTGATATGAAAAAGATCTTAGAAATTGATCTCTCAAATGATCAAGCTAGGAAAACCATTAGGCAGCTAGAGCCCCTTGCTGCAGAAAAACGGGAAAAGATGAAGGAGGAAATGATTGCAAAACTGAAAGACATGGGCAATTCTGTCCTGGGCCGCTTTGGGATGAGCGTAGACAACTTTAAAGCTGTCAAAGATCCAAACACTGGTTCCTATTCTATCTCATTCCAACGCTAA 807 0.4523 MVLIEHEESKQRNANPSNAANDDSDGFETASDTDLAGEGDDSGAGIPEEQNRTEQSHTEKQTEQEPEHDAPRSSESSENNALISEEESRQKALNQANEAKVEGNKLFVEGKYEEALLQYELALQAAPDMPSSVEIRSICHSNRGVCFLKLGKYDNTIKECTKALELNPVYIKALVRRGEAHEKLEHFEEAIADMKKILEIDLSNDQARKTIRQLEPLAAEKREKMKEEMIAKLKDMGNSVLGRFGMSVDNFKAVKDPNTGSYSISFQR* 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso18g1417 268 ProSiteProfiles TPR repeat profile. 137 170 IPR019734 GO:0005515
Gso18g1417 268 Pfam Tetratricopeptide repeat 172 202 IPR019734 GO:0005515
Gso18g1417 268 PANTHER TETRATRICOPEPTIDE REPEAT PROTEIN 1 8 268 - -
Gso18g1417 268 MobiDBLite consensus disorder prediction 1 97 - -
Gso18g1417 268 Gene3D Tetratricopeptide repeat domain 48 234 IPR011990 GO:0005515
Gso18g1417 268 PANTHER TETRATRICOPEPTIDE REPEAT PROTEIN 1 8 268 - -
Gso18g1417 268 SMART tpr_5 171 204 IPR019734 GO:0005515
Gso18g1417 268 SMART tpr_5 96 129 IPR019734 GO:0005515
Gso18g1417 268 SMART tpr_5 137 170 IPR019734 GO:0005515
Gso18g1417 268 SUPERFAMILY TPR-like 92 213 IPR011990 GO:0005515
Gso18g1417 268 MobiDBLite consensus disorder prediction 52 74 - -
Gso18g1417 268 ProSiteProfiles TPR repeat profile. 171 204 IPR019734 GO:0005515
Gso18g1417 268 Coils Coil 82 102 - -
Gso18g1417 268 Pfam Tetratricopeptide repeat 139 168 IPR001440 GO:0005515
Gso18g1417 268 MobiDBLite consensus disorder prediction 75 97 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso18g1417 Gso-Chr18 41229131 41233802 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso18g1417 54 227 Calmodulin-binding Proteins AT3G25230 31.915 1.53e-13 68.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso18g1417 K24926 - gmx:100808386 510.76