Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso18g1416 ATGGAAGATGAGGTAAAGGTAGCCAAAGTTGGAGAAAGCCAAAGAGAAGATTCTTCAAGAATTTTTCCATGTCTATTCTGTTCAAGAAAGTTTTACAGTTCTCAAGCTTTAGGGGGACACCAAAATGCTCACAAGAAAGAAAGAACAGCTGCAAGGAAGGCCAAGAAGGCTTCTGAGCACTCATGTGTTTCCTTCCCATCCCCACTGCCAACACCTATGGTTTTTGCTCCAACCCATCTAGACATCATAAACCCTGCGATGTTCATCACTGCCCATGCAGCAAAACTCCCTCATTTGCCAAGCCATCAAATTTCAGAACAATTTGGGTCAAATGGTGCACCTAGATTTGGCAATGCACTATTTTACGGGGGAAGTTCAATAAATCGGCTCCATGATGATGGGAAGAGCTCTAACTGCAGCTGGGGGAACACATCTCAACATATACAATTGATAAGTAACAATCAAAATCTTGGAATTTGGAATAATGGTACAGAGAAGGATCAAAAGCTTGATTTATCTCTCCATTTGTAA 531 0.4143 MEDEVKVAKVGESQREDSSRIFPCLFCSRKFYSSQALGGHQNAHKKERTAARKAKKASEHSCVSFPSPLPTPMVFAPTHLDIINPAMFITAHAAKLPHLPSHQISEQFGSNGAPRFGNALFYGGSSINRLHDDGKSSNCSWGNTSQHIQLISNNQNLGIWNNGTEKDQKLDLSLHL* 177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso18g1416 176 Gene3D Classic Zinc Finger 2 65 - -
Gso18g1416 176 PANTHER PROTEIN LATE FLOWERING 12 176 - -
Gso18g1416 176 SUPERFAMILY beta-beta-alpha zinc fingers 19 49 IPR036236 -
Gso18g1416 176 ProSiteProfiles Zinc finger C2H2 type domain profile. 22 49 IPR013087 -
Gso18g1416 176 PANTHER ZINC FINGER PROTEIN JAGGED 12 176 IPR045320 GO:0003700
Gso18g1416 176 ProSitePatterns Zinc finger C2H2 type domain signature. 24 44 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso18g1416 Gso-Chr18 41213438 41214615 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso18g1416 2 176 C2H2 Transcription Factor Family AT5G48890 42.077 1.15e-17 74.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso18g1416 - - gmx:100527084 355.91