Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso18g1392 ATGAGTTGCTTTTCATGTTTTTTGCCCAACGAAAAGAAAGTAGCAAAGAAGCCCAACAATAGGAAGAGGATACAACAGCCTGCTATTCATTCTCCCAAGGAATCAGCCCAACCAGTTCAGCCACGGCCAGATAATCATTTTAACAAGGCAAAGGCAACCCCACAAACAGAACCTAAAATAAACAAGGAGGCCAACAAAGATAATGGGAACAACATTGCTGCCCAAACATTCACCTTCAGGGAACTGGCTGCTGTCACAAAGAACTTCAGGCAGGAATGCCTAATAGGTGAAGGTGGTTTTGGAAGAGTTTATAAAGGAAGACTTGAAAAAACCAACCAGGAAGTAGCTGTGAAGCAACTTGACAGGAATGGATTACAAGGGAATAGAGAGTTTCTTGTTGAAGTTTTAATGTTGAGCCTCTTGCACCATCAAAATCTAGTGAATCTAATTGGATATTGTGCTGATGGAGATCAGAGATTATTGGTGTATGAGTACATGCCATTGGGAGCTCTTGAGGATCATCTGCTTGATCTTCAACCACAACAAAAGCCTCTAGATTGGTTCATCAGAATGAAAATAGCTTTGGATGCTGCAAAAGGTCTAGAATATTTGCATGATAAGGCGAATCCTCCGGTCATCTACCGCGACTTAAAATCCTCCAACATCTTGCTGGACAAAGAGTTCAATGCAAAACTCTCTGATTTTGGACTAGCAAAGTTGGGGCCAACAGGGGACAAGTCTCATGTCTCTTCAAGAGTAATGGGTACTTATGGATATTGTGCACCTGAGTATCAAAGAACTGGTCAGCTTACTGTAAAATCAGATGTGTACAGCTTTGGAGTTGTTTTGCTTGAATTGATCACTGGAAGGAGAGCCATTGATAACACAAGACCAACCCGGGAGCAAAATCTAGTTTCTTGGGCATATCCAGTATTCAAGGACCCTCACAGATACCCAGAATTAGCAGACCCCCTTCTTCAAGGAAACTTCCCAATGAGATCATTGCATCAAGCAGTGGCAGTAGCAGCCATGTGCCTCAATGAGGAGCCATCAGTGAGGCCCTTGGTCAGTGATATTGTCACTGCTCTTACTTTCCTTGGAACAGCTCCAGGGAGCCAAGACCTCACAGGAATTGCACCTGTTGACATGTCCTCATCACCACAAGAAGCCAATAATAGTGCCCCTTTGAATCTTCTTGACGATGATATCTTCATGGATCGCCAAAGGGCTGTTGCTGAAGCCATTGAATGGGGTACAAACACTAGGAGCAAAGCACCACTACGTGACAGTCCCACCTCTCTGTAA 1305 0.4375 MSCFSCFLPNEKKVAKKPNNRKRIQQPAIHSPKESAQPVQPRPDNHFNKAKATPQTEPKINKEANKDNGNNIAAQTFTFRELAAVTKNFRQECLIGEGGFGRVYKGRLEKTNQEVAVKQLDRNGLQGNREFLVEVLMLSLLHHQNLVNLIGYCADGDQRLLVYEYMPLGALEDHLLDLQPQQKPLDWFIRMKIALDAAKGLEYLHDKANPPVIYRDLKSSNILLDKEFNAKLSDFGLAKLGPTGDKSHVSSRVMGTYGYCAPEYQRTGQLTVKSDVYSFGVVLLELITGRRAIDNTRPTREQNLVSWAYPVFKDPHRYPELADPLLQGNFPMRSLHQAVAVAAMCLNEEPSVRPLVSDIVTALTFLGTAPGSQDLTGIAPVDMSSSPQEANNSAPLNLLDDDIFMDRQRAVAEAIEWGTNTRSKAPLRDSPTSL* 435
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso18g1392 434 ProSitePatterns Serine/Threonine protein kinases active-site signature. 212 224 IPR008271 GO:0004672|GO:0006468
Gso18g1392 434 Gene3D Transferase(Phosphotransferase) domain 1 166 372 - -
Gso18g1392 434 SUPERFAMILY Protein kinase-like (PK-like) 75 376 IPR011009 -
Gso18g1392 434 CDD STKc_IRAK 95 364 - -
Gso18g1392 434 PANTHER SERINE/THREONINE-PROTEIN KINASE PBL26-RELATED 2 424 - -
Gso18g1392 434 ProSitePatterns Protein kinases ATP-binding region signature. 95 118 IPR017441 GO:0005524
Gso18g1392 434 MobiDBLite consensus disorder prediction 14 68 - -
Gso18g1392 434 MobiDBLite consensus disorder prediction 49 68 - -
Gso18g1392 434 Gene3D Phosphorylase Kinase; domain 1 59 165 - -
Gso18g1392 434 ProSiteProfiles Protein kinase domain profile. 89 366 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso18g1392 434 PANTHER OS07G0668900 PROTEIN 2 424 - -
Gso18g1392 434 Pfam Protein kinase domain 91 360 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso18g1392 434 SMART serkin_6 89 366 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso18g1392 Gso-Chr18 40137455 40141096 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso18g1392 1 425 Glycoside Hydrolase AT3G07070 66.511 0.0 563
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-1 Gso18g1392 Pkinase 2.9e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso18g1392 - - gmx:100798806 845.499
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g1392 18 40137455 40141096 Gso8g2944 8 47066548 47070137 GST