Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso18g1391 ATGGAGAACAACGCATTCAGAGATCGAATCTTGGAGGACAATGAACACGAAGAAATCCCTGATTCCTTTGTTTGCTGCGTTTGTCTGGATCTATTATACAAGCCCATTGTGCTATCTTGTGGTCACATATGCTGTTTCTGGTGTGTCTATAATTCAATGAATTGTCTGCGGGAGTCTCAATGTCCAGTATGTAGGAATCAATATTATCACTTCCCAACAGTCTGCCAATTGCTTCACTTTTTACTTCTCAAGATCTATACCGCTGCTTACAAGAGAAGGGAAAACCAAACTCTTGAGGAAGAAAAGCAATCAGGATTCTACTCCCCTCAATTTGATCCTGATACATGTGAATCACAAGCTAAATTTGGTCATTCTGGTATCCCTAGTTCCTCCTCTAATTTGAATTTAACGTCCAACTCATGCAATGTGGGAACTTCTGAATGTCTGGAGCAATCAGGGTCAGCTGCCAATGAAGGAGATGATGGCACCATCTATTATGATGGAGAGTCTGATATTATTGGAACTCCTGCTAAAGGAAAAAAAATGCCTCAGGAAGAGCTTTCTGTACAAAGGAAATTATCAGTTGCAGATGTGACTTGTACGATGTGCAAGCAACTGCTCTTTCATCCTGTAGTTCTTAATTGTGGTCATGTGTACTGTCAAACTTGTGTCATCAACATAGATGACGAGATGCTCAGATGTAAAGTTTGTCAAAGTCCACATCCTAGAGGATTACCAAAAGTGTGTTTGGAGTTGGATCACTTTTTGGAGGAACAATTTCCTGAAGAATATGGACAGCGGAGAGATGCCATTGAACTAAAGCAAATCAAAGTCAAACCCGACACCCCTTCTTCTTGTTCATTGGATAATGGTAAAAGAGTAGAAAATATAGATTGGTGGTCTGATCCTGACCCAAAAGTTCACATTGGAGTTGGTTGCGATTTTTGCGGGATGTTTCCAATAATTGGAGATAGATATAGATGCATTGACTGTAAGGAGAAGATGGGCTTTGATCTTTGTGGTGATTGCTACGCAAGCCGCTCGAAGCTTCCCGGTCGATTTAATCAACAACACACCTCAGAGCATAAGTTCAAGCTTGTACCACCGAACATTATTCATAACATGATGTTGAGGCTGGCCACAGCACAGTTAGGAGAAGGTTCTATTGACCTGGAGTCTATAGCAAACATAGAAGTTACTTCAGATGGTGCCGCTTTGTTTGATGATGGAGAAGATAACCACAATGATTCTGAAGCCACCAATTGA 1266 0.41 MENNAFRDRILEDNEHEEIPDSFVCCVCLDLLYKPIVLSCGHICCFWCVYNSMNCLRESQCPVCRNQYYHFPTVCQLLHFLLLKIYTAAYKRRENQTLEEEKQSGFYSPQFDPDTCESQAKFGHSGIPSSSSNLNLTSNSCNVGTSECLEQSGSAANEGDDGTIYYDGESDIIGTPAKGKKMPQEELSVQRKLSVADVTCTMCKQLLFHPVVLNCGHVYCQTCVINIDDEMLRCKVCQSPHPRGLPKVCLELDHFLEEQFPEEYGQRRDAIELKQIKVKPDTPSSCSLDNGKRVENIDWWSDPDPKVHIGVGCDFCGMFPIIGDRYRCIDCKEKMGFDLCGDCYASRSKLPGRFNQQHTSEHKFKLVPPNIIHNMMLRLATAQLGEGSIDLESIANIEVTSDGAALFDDGEDNHNDSEATN* 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso18g1391 421 ProSitePatterns Zinc finger RING-type signature. 215 224 IPR017907 -
Gso18g1391 421 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 3 111 IPR013083 -
Gso18g1391 421 Gene3D - 303 367 IPR043145 -
Gso18g1391 421 SMART ring_2 25 64 IPR001841 -
Gso18g1391 421 SMART ring_2 200 237 IPR001841 -
Gso18g1391 421 PANTHER UNCHARACTERIZED 12 405 - -
Gso18g1391 421 ProSiteProfiles Zinc finger ZZ-type profile. 308 372 IPR000433 GO:0008270
Gso18g1391 421 Pfam RING-type zinc-finger 200 224 IPR027370 -
Gso18g1391 421 ProSiteProfiles Zinc finger RING-type profile. 25 65 IPR001841 -
Gso18g1391 421 SUPERFAMILY RING/U-box 17 74 - -
Gso18g1391 421 CDD RING-HC 25 64 - -
Gso18g1391 421 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 187 282 IPR013083 -
Gso18g1391 421 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRT1-LIKE 12 405 - -
Gso18g1391 421 Pfam Zinc finger, ZZ type 309 348 IPR000433 GO:0008270
Gso18g1391 421 ProSiteProfiles Zinc finger RING-type profile. 200 238 IPR001841 -
Gso18g1391 421 SUPERFAMILY RING/U-box 195 241 - -
Gso18g1391 421 SUPERFAMILY RING/U-box 301 367 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso18g1391 Gso-Chr18 40032609 40039740 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso18g1391 23 102 C3H Transcription Factor Family AT2G42030 31.250 2.16e-07 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso18g1391 - - gmx:100787174 892.108