Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso18g1389 ATGAAGTCCACTATGGCTCAGAATCAGAGTAATTGGGAAGCTGATAAAATGCTTGATGTTTATATTTATGATTATTTGATGAAAAGAAAATTACATGCTGCTGCAAAAGCTTTTGTTACAGAAGGAAAAGTTTCCACGGATCCAGTAGCAATTGATGCACCTGGAGGATTTCTCTATGAGTGGTGGTCTGTGTTTTGGGACATATTCATCTCAAGGACAAATGAGAAACATTCTGAGGCTGCTGCAGCTTACATTGAGACCCAGCAAACAAAAGCTAGAGAACAACAACTTCAAATGCAGCAATTGCAACTAATGCAGCAACGCAGTGCACAATTACAGCGAAGAGATCCTAATCATCCATCCCTTGGTGGTTCCATAAATGCCATGAACTCTGAAGGAATGTTGGGGCAGCCACCTGCAAGTGTGTTGGCAATGAAAATGTATGAAGAGCGAATGAAACACCCTCATTCAATGGATTCAGAGGCATCTCCAACTCTTATTGATCCCAATAGAATGGCCTTACTCAAATCTGCAGCTAGTCATCAAGGCCAATTGGTTCATGGAAATTCAGGGAATATGTCCACTGCATTGCAGCAAGGACGGGCTCCTTTAACCGCTGACATCAAAGGAGAAGTTAATTTAGGCGCCACTCCAAAGAGTTTGCCTATGGATACATCGGTTTATCGACAAGCAATTTTACATTCAAAATCTGGACTTGGCAGTGCAGGATTAAATCAAGGAGTTACAGGTCTTCCGTTGAAGGGTTGGCCTCTAGCATCTGGAATTGATCAACTAAGACCTAATTTGGGTGTCCAAATTCCGAAGCCCAATTTGACAGCCCAGAATCAATTTGTTTTGGCATCACAACAGCAACAGGTCTTGGCACAGGCTCAGGCACAAAATAACCTTGGAAATTCTAATTATGGTGACATGGATCCTCGTAGACTTTCTGGTCTTCCACGAGGTAGCTTAAGTGCAAAGGATGGTCAGTCTACTAGAAATGATGGATCTATTTGCTCCCAAATGCAGTCAGATTCACCTAAGCAGATGAAGATTGCTCAGTCACAACATTCATTATCTCAACAGCAGGAGCAATTACAGCAGCAGAGTAACAGAAAAAGAAAATCTGGAGCTGCCAATAGCACTGGTACAGGTAACACTGCTGCTCCTTCCCCTACTTCATCACCATCAACACATACACCTGGTGATGGATTAAATACAGCAAGCAGCATGCAGCATGTCCAAAAGAGCATGATGATGTATGGTACAGAGGCAACAGGAGGCCTTGCATCATCGTCGAATTTGCTGGACGACATGGATCGATTTGGAGATGTTGATGCTTTAGATGATAATGTTGAATCCTTTCTATCAAATGATGGCGGAGATGGTGGGAATCTCTATGGAACAGTGAAACAAAGTCCGGCTGAGCAACAGAAAGAGTCTTCTAAAGGTTTCACCTTTGCTGAAGTTGGTTGCAGAAGAACAAGGAACAGCAAAGTTACTTGTTGTCACTTTTCTTCAGATGGAAAGTGGCTAGCCAGTGCTGGAGATGACATGAAGGTTGACATCTGGAACATGGACACTTTAGAAACAGAGAGCACTCCTGCAGAACACAAATCAGTTATTACAGATGTCCGTTTTAGACCTAATTCATCTCAGTTGGCGACTGCTTCAACTGATAAATCTGTGCGGTTATGGGACACAACCAATCCAAGCCGTTGTCTGCAAGAATATAGTGGGCATTCATCAGCTATAATGTCTCTTGATTTCCATCCTAAGAAGACTGAACTTTTCTGCTTCTGTGATGGTGAGAATGAAATTCGGTATTGGAATATTAATTCATCCACCTGCACCCGTGTAACTAAGGGAGTTAGTGCACAAGTCAGGTTTCAGCCTAGACTGGGACGTTACCTGGCAGCAGCTTCTGATAAAGGGGTGTCAATTTTTGATGTTGAATCTGATACACAAATTTACACCCTCCAGGGACATCCTGAACCGGTGAGCTATATTTGCTGGGATGGCAATGGTGATGCCTTGGCATCTGTGAGTTCAAATTTGGTGAAGGTTTGGAGTTTGACCTCAGGAGGAGAATGCATTCATGAGTTCAGCTCCCCTGGGAACCAATTTCATTCCTGTGTTTTCCATCCAAGTTATTCAACTTTGTTGGTGGTTGGAGGAATTTCATCCTTGGAGTTATGGAACATGACAGAGAACAAAAGCATGACAATTACTACACATGAAAATGTAATATCTGCTTTGGCTCAGTCTTCTGTCACTGGAATGGTTGCCTCTGCAAGTCATGACAACTATGTAAAGCTGTGGAAATAA 2328 0.427 MKSTMAQNQSNWEADKMLDVYIYDYLMKRKLHAAAKAFVTEGKVSTDPVAIDAPGGFLYEWWSVFWDIFISRTNEKHSEAAAAYIETQQTKAREQQLQMQQLQLMQQRSAQLQRRDPNHPSLGGSINAMNSEGMLGQPPASVLAMKMYEERMKHPHSMDSEASPTLIDPNRMALLKSAASHQGQLVHGNSGNMSTALQQGRAPLTADIKGEVNLGATPKSLPMDTSVYRQAILHSKSGLGSAGLNQGVTGLPLKGWPLASGIDQLRPNLGVQIPKPNLTAQNQFVLASQQQQVLAQAQAQNNLGNSNYGDMDPRRLSGLPRGSLSAKDGQSTRNDGSICSQMQSDSPKQMKIAQSQHSLSQQQEQLQQQSNRKRKSGAANSTGTGNTAAPSPTSSPSTHTPGDGLNTASSMQHVQKSMMMYGTEATGGLASSSNLLDDMDRFGDVDALDDNVESFLSNDGGDGGNLYGTVKQSPAEQQKESSKGFTFAEVGCRRTRNSKVTCCHFSSDGKWLASAGDDMKVDIWNMDTLETESTPAEHKSVITDVRFRPNSSQLATASTDKSVRLWDTTNPSRCLQEYSGHSSAIMSLDFHPKKTELFCFCDGENEIRYWNINSSTCTRVTKGVSAQVRFQPRLGRYLAAASDKGVSIFDVESDTQIYTLQGHPEPVSYICWDGNGDALASVSSNLVKVWSLTSGGECIHEFSSPGNQFHSCVFHPSYSTLLVVGGISSLELWNMTENKSMTITTHENVISALAQSSVTGMVASASHDNYVKLWK* 776
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso18g1389 775 Gene3D - 625 775 IPR015943 GO:0005515
Gso18g1389 775 ProSiteProfiles Trp-Asp (WD) repeats profile. 493 534 IPR001680 GO:0005515
Gso18g1389 775 Coils Coil 85 105 - -
Gso18g1389 775 MobiDBLite consensus disorder prediction 324 408 - -
Gso18g1389 775 PANTHER TRANSCRIPTIONAL REGULATOR OF FILAMENTOUS GROWTH FLO8 9 775 IPR044716 GO:0003714
Gso18g1389 775 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 743 775 - -
Gso18g1389 775 MobiDBLite consensus disorder prediction 304 408 - -
Gso18g1389 775 ProSiteProfiles LIS1 homology (LisH) motif profile. 14 46 IPR006594 GO:0005515
Gso18g1389 775 PRINTS G protein beta WD-40 repeat signature 512 526 IPR020472 -
Gso18g1389 775 PRINTS G protein beta WD-40 repeat signature 554 568 IPR020472 -
Gso18g1389 775 PRINTS G protein beta WD-40 repeat signature 762 775 IPR020472 -
Gso18g1389 775 Pfam WD domain, G-beta repeat 741 775 IPR001680 GO:0005515
Gso18g1389 775 Pfam WD domain, G-beta repeat 573 611 IPR001680 GO:0005515
Gso18g1389 775 Pfam WD domain, G-beta repeat 537 567 IPR001680 GO:0005515
Gso18g1389 775 Pfam WD domain, G-beta repeat 498 525 IPR001680 GO:0005515
Gso18g1389 775 Pfam WD domain, G-beta repeat 656 691 IPR001680 GO:0005515
Gso18g1389 775 ProSiteProfiles Trp-Asp (WD) repeats profile. 535 567 IPR001680 GO:0005515
Gso18g1389 775 ProSiteProfiles Trp-Asp (WD) repeats profile. 578 620 IPR001680 GO:0005515
Gso18g1389 775 PANTHER TRANSCRIPTION FACTOR WD40-LIKE FAMILY-RELATED 9 775 - -
Gso18g1389 775 SMART Lish 14 46 IPR006594 GO:0005515
Gso18g1389 775 ProSiteProfiles Trp-Asp (WD) repeats profile. 743 775 IPR001680 GO:0005515
Gso18g1389 775 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 493 528 - -
Gso18g1389 775 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 535 567 - -
Gso18g1389 775 Pfam LisH 16 41 IPR006594 GO:0005515
Gso18g1389 775 SMART WD40_4 695 734 IPR001680 GO:0005515
Gso18g1389 775 SMART WD40_4 528 567 IPR001680 GO:0005515
Gso18g1389 775 SMART WD40_4 486 525 IPR001680 GO:0005515
Gso18g1389 775 SMART WD40_4 571 611 IPR001680 GO:0005515
Gso18g1389 775 SMART WD40_4 736 775 IPR001680 GO:0005515
Gso18g1389 775 SMART WD40_4 614 650 IPR001680 GO:0005515
Gso18g1389 775 SMART WD40_4 653 691 IPR001680 GO:0005515
Gso18g1389 775 Gene3D - 485 624 IPR015943 GO:0005515
Gso18g1389 775 Coils Coil 352 372 - -
Gso18g1389 775 CDD WD40 497 775 - -
Gso18g1389 775 SUPERFAMILY WD40 repeat-like 494 775 IPR036322 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso18g1389 Gso-Chr18 39932077 39941641 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso18g1389 575 774 Miscellaneous Gene Families AT5G08390 24.272 4.26e-10 61.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR LUG Gso18g1389 WD40 0.025 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso18g1389 - - gmx:100799686 1462.59