Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Gso18g1348 | ATGGAAGGTCGCCGGAGGATAACGCTACATGAACAAATGTCAGCTTCCGATAACAGCCGAGCCCGAGAGCTAGCCGGCTTGACCCTTGACGACGTGTTAGGGAACCAGAAGAAGTTTTCATCAACGCCACCCAGCCAACAACTTCCCAAGAGCCGAACCCTACTTGACATCATCAAAGAAGACGAGAGCAACAAGAAGGACCGCAGATCTTGGAAAGCCTTCAAGGACAAGCTTCGGCTGAAGCGCGCAGGCTCAGCTTGGACATCGTCAATTCATATCCCGACCTCGGATGTCCCTATCCCTAACCCGAATAGCCGAACCTTCACCCAGTTTGGTCGCCGCAACTCGGTCCGATCCCCGACTCAGACTCAGACTCACTCCGACTCGGACATGTCAACTCCCTACAATGCTCACCAAGTCGAAGACCTCGACCCCGCCGACGACGACTCCGGTTCTCCGACCACCGGGCCTCCCGCCGTCCGCCCCCAATTCAGCCGCCACGGCTCCACCCGCTTTGCCGGCGACGCCTCCGGCGACAACACCGCCGGCACGCTCCGGCCGCAGCTCTCGCGGCGGAACTCCACCAACATTTCGTCGGAGCCCTACAAGCGGGGCCGCGTGGTGACGTTCCGGGACAGCTTTGACGACGAAGAGGCCGACGGCGAGGACGGCAAGAAGCCCGGGGAGGGGAGGGCGCTGTCGGCGAGGGAGGCGGTGGCAGCGCAGGAGGCGGCGGAGGCGGCGGCGCAGGAAGCGGAGGCGGCGGAGCAGGCGCCGGTGACGATGTCCCTGATGGACTTGCTGGAGGAAACTGACAGGGAGATGGGGCTCGAAGGATCGAGGTATATATTGAGTGATGATGAGGACTTTGATGAGGATGAAGACGAAGATGATGATGGCGGAGAGGGTTCTATGGAGCACACTTGCTGTGTTTGCATGGTGAAGCATAAGGCTGCTGCTTTTATACCTTGTGGCCACACTTTCTGCAGGATGTGCTCAAGGGAGCTTATGGTTAGTAGGGGAAATTGCCCTCTCTGCAACAATTTCATTTTGGAGATTCTTGACATTTTCTGA | 1074 | 0.5857 | MEGRRRITLHEQMSASDNSRARELAGLTLDDVLGNQKKFSSTPPSQQLPKSRTLLDIIKEDESNKKDRRSWKAFKDKLRLKRAGSAWTSSIHIPTSDVPIPNPNSRTFTQFGRRNSVRSPTQTQTHSDSDMSTPYNAHQVEDLDPADDDSGSPTTGPPAVRPQFSRHGSTRFAGDASGDNTAGTLRPQLSRRNSTNISSEPYKRGRVVTFRDSFDDEEADGEDGKKPGEGRALSAREAVAAQEAAEAAAQEAEAAEQAPVTMSLMDLLEETDREMGLEGSRYILSDDEDFDEDEDEDDDGGEGSMEHTCCVCMVKHKAAAFIPCGHTFCRMCSRELMVSRGNCPLCNNFILEILDIF* | 358 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Gso18g1348 | 357 | Coils | Coil | 235 | 258 | - | - | |
| Gso18g1348 | 357 | ProSiteProfiles | Zinc finger RING-type profile. | 309 | 347 | IPR001841 | - | |
| Gso18g1348 | 357 | CDD | RING-HC | 309 | 346 | - | - | |
| Gso18g1348 | 357 | Pfam | Zinc finger, C3HC4 type (RING finger) | 306 | 350 | - | - | |
| Gso18g1348 | 357 | MobiDBLite | consensus disorder prediction | 1 | 20 | - | - | |
| Gso18g1348 | 357 | MobiDBLite | consensus disorder prediction | 91 | 136 | - | - | |
| Gso18g1348 | 357 | MobiDBLite | consensus disorder prediction | 283 | 302 | - | - | |
| Gso18g1348 | 357 | SMART | ring_2 | 309 | 346 | IPR001841 | - | |
| Gso18g1348 | 357 | PANTHER | OS01G0917900 PROTEIN | 2 | 357 | - | - | |
| Gso18g1348 | 357 | MobiDBLite | consensus disorder prediction | 174 | 202 | - | - | |
| Gso18g1348 | 357 | MobiDBLite | consensus disorder prediction | 285 | 302 | - | - | |
| Gso18g1348 | 357 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 285 | 357 | IPR013083 | - | |
| Gso18g1348 | 357 | MobiDBLite | consensus disorder prediction | 205 | 232 | - | - | |
| Gso18g1348 | 357 | PANTHER | OS01G0917900 PROTEIN | 2 | 357 | - | - | |
| Gso18g1348 | 357 | MobiDBLite | consensus disorder prediction | 91 | 234 | - | - | |
| Gso18g1348 | 357 | SUPERFAMILY | RING/U-box | 308 | 353 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Gso18g1348 | Gso-Chr18 | 37718778 | 37721884 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Gso18g1348 | 18 | 357 | C3H Transcription Factor Family | AT3G07120 | 35.340 | 8.95e-60 | 195 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Gso18g1348 | - | - | gmx:100795449 | 642.884 |