Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso18g1309 ATGGCAACTTCAGAGCAGCAAGTCCCTCCCCAAACTCCTGCAGCTGATATTGTTGGCAATGCTTTTGTGGATCAATACTACCATATGTTGCATGAAAGCCCTGAGCTTGTGCATAGGTTTTACCAAGATGTCAGTAAGCTTGGCCGTCCTGAGCAGAATGGCATAATGGGTATTACAACCACAATGTTTGATATTAACAAGAAGATACTATCATTGGGTTATGGCGAACTCAGTGCAGAGATTGTATCTGTGGATGCACAAGAATCTTATGGTGGGGGAGTCATTGTCTTGGTCACTGGGTTTATGATAGGAAAGGACGACATTAAGCAGAAATTTACTCAATGTTTCTTCCTTGCTCCTCAAGAGAAAGGCTACTTTGTTTTGAATGACGTTTTCAGATATGTTGATGAAAATGGAATCCAAGGGTCTGCTCATGATATTGGAACTCCTGCCCCTCCTGACACTGTTGCCGATCCTTCTGTGCTGGAGACACAAGTTTCCGAGCAAATATCTGTGACAGCTGAGGATGGTGGAGAGGAGGTCTACAACCCAGAAAATGGTCAAGCTGCAATTGAAGAAGAGGAAGCACCTGTACCTGAGGTTCTTGATGAAATTCCTGATGATTCTCAGATGGTAGCTGGATTGGCATCTCAAATTGAAGAAGTTCCAAAGAAGTCTTATGCTTATATTGTGAAGGTCATGAAAGAGGGTGCTGCGCCCTCTTCCACTGTGACACCTGTTTCTGTGAAATCTGCCCACAAGAGCCAAGAACAGCAGGGTATTGCTGCACCTCCACCATCTAGCATATCAGAGACAAATGGTTCTATTATAAACACTAATGAAGTTGGAAACAATCAAGAAACTGAAGCCGAGGGCTATTCTATTTATGTGAAAGGTCTGCCACCAACTGCTACGCCTGCCGTCTTGGAGAATGAGTTTAAGAAGTTTGGACCTATTAAGAGTGGTGGTATCCAAGTTAGGAGCCAAAAGGGATTTTCCTTTGGCTTTGTGGAGTTTGAAGTGGCAAGTGCTGTGCAAAGTGCACTTGAGGCTTCTCCAATTTTGATTAATGGCCGCCAAGTTGTTGTTGAGGAAAAGAGATCAACTAATCGAGGTAGAGGACGTTTCTCATCTGGCAGGGCTCCTAGCTTCAGGGGTGAAGGTGCAAGAGGGCGTGGAAATTACGGAAATGGCCGAAGCTATGGCCGTGGTGACTTTAATGGCAGGGGAGAATATGGTTATAGGAATGGCAATCGGGGAGGGTTTTCAAGAGGTGATGGGTATCAGAGAAATGATCATATGGGTACCGGCGGTGGTCGCATGAATCGAGCAGGTGGGTCGGCTGTTAATCCAGCAGTCAAAACCGCGGGGGTTCGAGTTCCTGCCTCTGCTTGA 1395 0.4566 MATSEQQVPPQTPAADIVGNAFVDQYYHMLHESPELVHRFYQDVSKLGRPEQNGIMGITTTMFDINKKILSLGYGELSAEIVSVDAQESYGGGVIVLVTGFMIGKDDIKQKFTQCFFLAPQEKGYFVLNDVFRYVDENGIQGSAHDIGTPAPPDTVADPSVLETQVSEQISVTAEDGGEEVYNPENGQAAIEEEEAPVPEVLDEIPDDSQMVAGLASQIEEVPKKSYAYIVKVMKEGAAPSSTVTPVSVKSAHKSQEQQGIAAPPPSSISETNGSIINTNEVGNNQETEAEGYSIYVKGLPPTATPAVLENEFKKFGPIKSGGIQVRSQKGFSFGFVEFEVASAVQSALEASPILINGRQVVVEEKRSTNRGRGRFSSGRAPSFRGEGARGRGNYGNGRSYGRGDFNGRGEYGYRNGNRGGFSRGDGYQRNDHMGTGGGRMNRAGGSAVNPAVKTAGVRVPASA* 465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso18g1309 464 ProSiteProfiles Nuclear transport factor 2 domain profile. 18 134 IPR018222 -
Gso18g1309 464 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 295 359 IPR000504 GO:0003723
Gso18g1309 464 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 293 368 IPR000504 GO:0003723
Gso18g1309 464 PANTHER RAS GTPASE-ACTIVATING PROTEIN-BINDING PROTEIN 8 403 IPR039539 -
Gso18g1309 464 MobiDBLite consensus disorder prediction 366 449 - -
Gso18g1309 464 CDD RRM_SF 295 364 - -
Gso18g1309 464 SMART rrm1_1 294 364 IPR000504 GO:0003723
Gso18g1309 464 SUPERFAMILY NTF2-like 15 135 IPR032710 -
Gso18g1309 464 Pfam Nuclear transport factor 2 (NTF2) domain 18 134 IPR002075 -
Gso18g1309 464 CDD NTF2 15 136 IPR018222 -
Gso18g1309 464 SUPERFAMILY RNA-binding domain, RBD 285 398 IPR035979 GO:0003676
Gso18g1309 464 Gene3D - 243 382 IPR012677 -
Gso18g1309 464 Gene3D - 7 138 - -
Gso18g1309 464 PANTHER NUCLEAR TRANSPORT FACTOR 2 (NTF2) FAMILY PROTEIN-RELATED 8 403 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso18g1309 Gso-Chr18 35457930 35463005 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso18g1309 K24983 - gmx:100800392 850.506
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g1309 18 35457930 35463005 Gso8g2884 8 46485068 46489906 GST